Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D02_e492_08.seq
         (1532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446...    55   1e-07
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556...    31   1.8  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.2  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   7.4  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   7.4  
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684...    29   9.8  

>03_03_0186 + 15243150-15243563,15243685-15243777,15244604-15244666,
            15245028-15245114,15245197-15245349,15245422-15245579,
            15246458-15246692,15246782-15246892,15246942-15246968,
            15247269-15248327,15248432-15248692,15249011-15249196,
            15249642-15250793,15250886-15251236,15251343-15251738
          Length = 1581

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
 Frame = +2

Query: 86   RARLGLYIFARANLFRNCFELQPTFNQLIERPLQLELVPGERYP-AQRRNDAAVPEALIL 262
            RARLGLY+F R +LF  C+ELQPTF  L++RP +L L   E  P  +R  +       + 
Sbjct: 1373 RARLGLYVFCRRSLFEQCYELQPTFQLLLQRPDKLGLNLEECTPFTERPLEETGNIHYVA 1432

Query: 263  SITDMPHMARY 295
             I D+ H+  +
Sbjct: 1433 GIEDIGHLVNF 1443


>06_03_0850 -
           25354002-25354391,25354480-25354575,25355352-25355634,
           25357213-25357799
          Length = 451

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 380 AKASRSQQPDRLVPTHPGATDGQDSDDEESAI 475
           A A  +  P R  P  P A+DG DSDDE+  +
Sbjct: 62  AAADAADPPPRQPPPPPPASDGADSDDEDYVV 93


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 657 ITIHWPSFYNVV-TGKTLALPNLIALQH 737
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 719 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 817
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 719 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 817
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436


>04_04_1249 -
           32067644-32067787,32068245-32068346,32068415-32068438,
           32068439-32068543,32068625-32068729,32068885-32068966,
           32069254-32069456,32069534-32069692,32070045-32070154,
           32070264-32070405,32070544-32070690,32070773-32070847,
           32070923-32071132,32071223-32071426,32071514-32071633,
           32071743-32071852,32072033-32072177,32072266-32072499,
           32072611-32072646
          Length = 818

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
 Frame = +2

Query: 113 ARANLFRNCFELQPTFN-QLIERPLQLELVPGERYPAQRRNDAAVPEALILSITDMPHMA 289
           A  NL R C  L+ +FN +  +R L +E    ER   QR +  A  + L + +  + H A
Sbjct: 152 AHLNLTRQCDSLEESFNKEKADRMLAVESYEKER--QQRESAEASLDLLSVDLERVSHEA 209

Query: 290 RYVYDLYLEKVRDCTK---QYEXXXXXXXXXXXAKASRS 397
           +  +   L+ V+D  K   +Y            A AS+S
Sbjct: 210 KR-FSEQLKMVQDTNKRLQEYNTSLQQYNSNLQADASKS 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,442,396
Number of Sequences: 37544
Number of extensions: 607033
Number of successful extensions: 1807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4930895900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)