Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D02_e492_08.seq
         (1532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          27   0.32 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      27   0.32 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   2.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   7.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 359 NSGNFRTV-WCNPEPFPSRGRRRSAPYAAYRLYSI 258
           NSG + T+ + N   FP R R  S PY  Y+  ++
Sbjct: 294 NSGFYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNV 328


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 359 NSGNFRTV-WCNPEPFPSRGRRRSAPYAAYRLYSI 258
           NSG + T+ + N   FP R R  S PY  Y+  ++
Sbjct: 294 NSGFYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNV 328


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 471 PYHQHLPSNQHTLSTRSMNRRNYQNNL 551
           P+H++  S   T +  S N+ NY  N+
Sbjct: 525 PHHEYYDSKSSTETPPSYNQLNYNENI 551


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 405 GCCERDAFADPGADHELWELSY 340
           GC     FA PG D+ L E+ +
Sbjct: 10  GCTRSAHFARPGGDYSLDEIEW 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,296
Number of Sequences: 438
Number of extensions: 6119
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53711625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)