Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D02_e492_08.seq
         (1532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38770.1 68415.m04760 expressed protein                             54   2e-07
At5g65550.1 68418.m08248 UDP-glucoronosyl/UDP-glucosyl transfera...    31   2.0  
At1g68550.2 68414.m07832 AP2 domain-containing transcription fac...    29   8.1  
At1g68550.1 68414.m07831 AP2 domain-containing transcription fac...    29   8.1  

>At2g38770.1 68415.m04760 expressed protein
          Length = 1509

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = +2

Query: 86   RARLGLYIFARANLFRNCFELQPTFNQLIERPLQLELVPGERYPAQRRNDAAVPEA-LIL 262
            RARLGLY+F R +LF  C+ELQPTF  L++RP +L L   E      R    V  + L+ 
Sbjct: 1357 RARLGLYVFCRRSLFEQCYELQPTFQLLLQRPDRLGLNFNENTAYTDRVVEEVENSYLVH 1416

Query: 263  SITDMPHM 286
             + +M H+
Sbjct: 1417 DVEEMAHI 1424


>At5g65550.1 68418.m08248 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase ;similar
           to flavonol 3-O-glucosyltransferase (anthocyanin
           rhamnosyl transferase) from Petunia hybrida [SP|Q43716]
          Length = 466

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 92  RLGL-YIFARANLFRNCFELQPTFNQLIERPLQLELVPGERYPAQRRNDA 238
           RLGL Y+ +   + R+C EL+P + QL+ +     ++P    PA   +DA
Sbjct: 209 RLGLAYVGSEVIVIRSCMELEPEWIQLLSKLQGKPVIPIGLLPATPMDDA 258


>At1g68550.2 68414.m07832 AP2 domain-containing transcription
           factor, putative contains Pfam profile: PF00847 AP2
           domain
          Length = 324

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 410 RLVPTHPGATDGQDSDDEESAIPSTSSFQPTHIVNEIDEP 529
           R++   P ATD   SD+EE  +P     +   IV EI+ P
Sbjct: 40  RIIVNDPYATDDSSSDEEELKVPKPRKMK--RIVREINFP 77


>At1g68550.1 68414.m07831 AP2 domain-containing transcription
           factor, putative contains Pfam profile: PF00847 AP2
           domain
          Length = 324

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 410 RLVPTHPGATDGQDSDDEESAIPSTSSFQPTHIVNEIDEP 529
           R++   P ATD   SD+EE  +P     +   IV EI+ P
Sbjct: 40  RIIVNDPYATDDSSSDEEELKVPKPRKMK--RIVREINFP 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,747,166
Number of Sequences: 28952
Number of extensions: 428980
Number of successful extensions: 1103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4106040192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)