Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D01_e484_07.seq
         (1524 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P59983 Cluster: Uncharacterized protein Mb2590; n=13; M...    34   8.6  

>UniRef50_P59983 Cluster: Uncharacterized protein Mb2590; n=13;
            Mycobacterium|Rep: Uncharacterized protein Mb2590 -
            Mycobacterium bovis
          Length = 325

 Score = 34.3 bits (75), Expect = 8.6
 Identities = 22/68 (32%), Positives = 24/68 (35%)
 Frame = +1

Query: 1306 PXXRPXNPXKNXGGXLAXLXGPXXXWGXXPXLGAPXPXPIXTXXXKXXXXPPPSXGWGPX 1485
            P   P NP    GG       P   +G  P      P P  T        PPP  G+GP 
Sbjct: 4    PPEHPGNPADPQGGNQGAGSYPPPGYGAPPPPPGYGPPP-GTYLPPGYNAPPPPPGYGP- 61

Query: 1486 XPPXXRPP 1509
             PP   PP
Sbjct: 62   -PPGPPPP 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,041,758,055
Number of Sequences: 1657284
Number of extensions: 16255003
Number of successful extensions: 33883
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30631
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 162521628425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)