Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D01_e484_07.seq
         (1524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    30   5.0  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    29   6.6  

>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical protein
            C15A11.5 protein.
          Length = 316

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
 Frame = +1

Query: 1291 PGXXXPXXRPXNPXKNXGGXLAXLXGPXXXWGXXPXLGAP-XPXPIXTXXXKXXXXPPPS 1467
            PG   P   P  P +  G       GP    G     GAP  P        +    P PS
Sbjct: 150  PGPKGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPS 209

Query: 1468 XGWGPXXPP 1494
               GP  PP
Sbjct: 210  GAPGPQGPP 218


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical protein
            C09G5.4 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
 Frame = +1

Query: 1291 PGXXXPXXRPXNPXKNXGGXLAXLXGPXXXWGXXPXLGAP-XPXPIXTXXXKXXXXPPPS 1467
            PG   P  +P +P +      A   GP    G    +GAP  P        +    P PS
Sbjct: 149  PGPQGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGPS 208

Query: 1468 XGWGPXXP 1491
               GP  P
Sbjct: 209  GAPGPQGP 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,319,867
Number of Sequences: 27780
Number of extensions: 420868
Number of successful extensions: 919
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4379894956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)