Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C12_e571_06.seq
         (1525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1007 + 13160772-13161311                                         32   1.0  
06_03_0356 - 19826613-19826654,19827077-19827186,19827379-19827532     31   2.4  
09_04_0306 + 16555664-16556623                                         29   7.3  
05_05_0317 + 24039343-24042717                                         29   7.3  

>03_02_1007 + 13160772-13161311
          Length = 179

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 160 PNPPGSLSFPLHDSPLPTGVAAAPRHPYLYVNNHYK 267
           P PP  +  P   +P P  VAA P+ PY Y  + +K
Sbjct: 9   PAPPSPVQAPAPAAPPPVSVAARPQAPYYYYCHGWK 44


>06_03_0356 - 19826613-19826654,19827077-19827186,19827379-19827532
          Length = 101

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 86  RRGTVLCSGDEARAATRGGEC 148
           R+G +L  GDEA+A T+ GEC
Sbjct: 10  RKGVILRKGDEAQARTKKGEC 30


>09_04_0306 + 16555664-16556623
          Length = 319

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 PNPPGSLSFPLHDSPLPTGVAAAPRHP 240
           P PPGS+S P++ SP+    AA  R P
Sbjct: 194 PAPPGSVSHPINGSPVVPAAAALWRVP 220


>05_05_0317 + 24039343-24042717
          Length = 1124

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 775 NLRSLQYIKKRGRGVTVPPRRATLSSSFYIQLANFVNLHVCSLI 644
           NL+ L+Y+   G G+TV P  +++   F +Q     N HV   I
Sbjct: 594 NLKMLRYLNLSGTGITVLP--SSIGRLFNLQTLKLKNCHVLECI 635


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,623,138
Number of Sequences: 37544
Number of extensions: 354553
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)