Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C11_e563_05.seq
         (1569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0302 - 2021221-2023305                                           31   1.9  

>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 39/180 (21%), Positives = 46/180 (25%), Gaps = 7/180 (3%)
 Frame = +1

Query: 1030 PGGXXGXGKRGLXXXXNI---XXGGXPAPERXXATPXFPSPXXXXLXTXXPLANXFXXPX 1200
            PGG  G G +G     +      G  P P     TP +PSP      +  P       P 
Sbjct: 389  PGGSPGRGGQGPPAPVSSPPRRRGPYPQPPSSSPTPSYPSP-----SSSYPAPPGSNTPS 443

Query: 1201 VXGPXAXXXXPXSXXXXXXLGXXPPXXXGPXGGXXLLX*XXRX*PFRXXXPGXXXXSGXG 1380
               P +    P S           P    P GG           P     P         
Sbjct: 444  YPSPPSSATTPSSHSPPGGSSSTTPSYPSPNGGKPST--PSHPSPPGSTTPSYPSPPSSS 501

Query: 1381 FXPTRXKPLPPXGXXP----PPPXXXXPKRGGQXXXRPXRXXXPLPXVTXSARXMXXAXR 1548
              P+   P P     P    PP     P         P     P P VT +      A R
Sbjct: 502  TTPSYHSP-PQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADR 560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,178,847
Number of Sequences: 37544
Number of extensions: 546724
Number of successful extensions: 1208
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5070121196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)