Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C11_e563_05.seq
         (1569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 33   0.62 
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     32   1.4  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              32   1.4  
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   2.5  
SB_25728| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.7  
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              29   7.7  

>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 33.1 bits (72), Expect = 0.62
 Identities = 24/82 (29%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
 Frame = +3

Query: 1269 PAXVXXAXRGPVPXEXXXXXLT-FPXXXPRXPXXVGXRXXPXPAXTSXXXRXRXPPPXXX 1445
            P  V      P P       +   P   PR P        P P  TS   R   PPP   
Sbjct: 86   PPLVPAGVEAPTPTPMVAQSVAPTPPPPPRAPETPSQAPSPPPPPTSPATRA-PPPPPPI 144

Query: 1446 XPKTGG---AXPLXPXXXXXPP 1502
             P TGG     P+ P     PP
Sbjct: 145  APATGGPPPPPPIAPATGGPPP 166


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +1

Query: 1408 PPXGXXPPPPXXX--XPKRGGQXXXRPXRXXXPLP 1506
            PP    PPPP      P RGGQ   +P +   P P
Sbjct: 134  PPKNSSPPPPFGAPPPPDRGGQLAKKPSQGSFPPP 168


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +1

Query: 1408 PPXGXXPPPPXXX--XPKRGGQXXXRPXRXXXPLP 1506
            PP    PPPP      P RGGQ   +P +   P P
Sbjct: 46   PPKNSSPPPPFGAPPPPDRGGQLAKKPSQGSFPPP 80


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 19/51 (37%), Positives = 21/51 (41%)
 Frame = +1

Query: 1369 SGXGFXPTRXKPLPPXGXXPPPPXXXXPKRGGQXXXRPXRXXXPLPXVTXS 1521
            S  G  PT     PP    PPPP    P RGG    +  R   PLP +  S
Sbjct: 873  SAPGSPPTGADDFPPP---PPPPVMKKPSRGG--SLKESRLHPPLPSIHGS 918


>SB_25728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 572 FFNR--YIITSWFPRLRLHFICSLAASEKVHITFHSYPNLKE 691
           +FNR  Y++ +    + L  I S+  S   HI FHSYPN+ +
Sbjct: 49  WFNRLGYLVAT---EICLLIIWSMGISPDKHIVFHSYPNIPQ 87


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 491  TIYTKRY*YIAYITPNYASKSSENRKIFFNRYIITSWFPRLRLHFICSLAASEKVHITFH 670
            +++ +R+    YI   Y S  S   +++      +S   R+RL+ + +  +S  VHI  H
Sbjct: 1687 SVHIRRHCQCVYIVSAYTSSLSVGIRLYIVSAYTSSLSVRIRLYIVSAYTSSLSVHIHRH 1746


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,884,747
Number of Sequences: 59808
Number of extensions: 575973
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5129408549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)