Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C11_e563_05.seq
         (1569 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT009771-1|AAP88773.1|  614|Homo sapiens histone deacetylase 7A ...    31   8.7  
BC064840-1|AAH64840.1|  954|Homo sapiens HDAC7A protein protein.       31   8.7  
BC020505-1|AAH20505.2|  711|Homo sapiens HDAC7A protein protein.       31   8.7  
AY321367-1|AAP84704.1|  915|Homo sapiens histone deacetylase 7A ...    31   8.7  
AY302468-1|AAQ18232.1|  991|Homo sapiens histone deacetylase pro...    31   8.7  
AL117455-1|CAB55935.1|  878|Homo sapiens hypothetical protein pr...    31   8.7  
AK001190-1|BAA91545.1|  614|Homo sapiens protein ( Homo sapiens ...    31   8.7  
AF239243-1|AAF63491.1|  855|Homo sapiens histone deacetylase 7 p...    31   8.7  

>BT009771-1|AAP88773.1|  614|Homo sapiens histone deacetylase 7A
            protein.
          Length = 614

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 1390 TRXKPLPPXGXXPPPPXXXXPK 1455
            TR +PLPP    PPPP    P+
Sbjct: 18   TRSEPLPPSATAPPPPGPMQPR 39


>BC064840-1|AAH64840.1|  954|Homo sapiens HDAC7A protein protein.
          Length = 954

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 1390 TRXKPLPPXGXXPPPPXXXXPK 1455
            TR +PLPP    PPPP    P+
Sbjct: 358  TRSEPLPPSATAPPPPGPMQPR 379


>BC020505-1|AAH20505.2|  711|Homo sapiens HDAC7A protein protein.
          Length = 711

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 1390 TRXKPLPPXGXXPPPPXXXXPK 1455
            TR +PLPP    PPPP    P+
Sbjct: 115  TRSEPLPPSATAPPPPGPMQPR 136


>AY321367-1|AAP84704.1|  915|Homo sapiens histone deacetylase 7A
            variant 3 protein.
          Length = 915

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 1390 TRXKPLPPXGXXPPPPXXXXPK 1455
            TR +PLPP    PPPP    P+
Sbjct: 319  TRSEPLPPSATAPPPPGPMQPR 340


>AY302468-1|AAQ18232.1|  991|Homo sapiens histone deacetylase protein.
          Length = 991

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 1390 TRXKPLPPXGXXPPPPXXXXPK 1455
            TR +PLPP    PPPP    P+
Sbjct: 395  TRSEPLPPSATAPPPPGPMQPR 416


>AL117455-1|CAB55935.1|  878|Homo sapiens hypothetical protein
            protein.
          Length = 878

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 1390 TRXKPLPPXGXXPPPPXXXXPK 1455
            TR +PLPP    PPPP    P+
Sbjct: 282  TRSEPLPPSATAPPPPGPMQPR 303


>AK001190-1|BAA91545.1|  614|Homo sapiens protein ( Homo sapiens cDNA
            FLJ10328 fis, clone NT2RM2000588, weakly similar to
            HISTONE DEACETYLASE HDA1. ).
          Length = 614

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 1390 TRXKPLPPXGXXPPPPXXXXPK 1455
            TR +PLPP    PPPP    P+
Sbjct: 18   TRSEPLPPSATAPPPPGPMQPR 39


>AF239243-1|AAF63491.1|  855|Homo sapiens histone deacetylase 7
            protein.
          Length = 855

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 1390 TRXKPLPPXGXXPPPPXXXXPK 1455
            TR +PLPP    PPPP    P+
Sbjct: 316  TRSEPLPPSATAPPPPGPMQPR 337


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,287,714
Number of Sequences: 237096
Number of extensions: 3119615
Number of successful extensions: 6246
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6108
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23356832264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)