Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C11_e563_05.seq
         (1569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   3.9  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   3.9  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   3.9  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    30   5.1  
AL161712-3|CAC35908.1|  136|Caenorhabditis elegans Hypothetical ...    30   5.1  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    30   5.1  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    29   9.0  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    29   9.0  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 1387 PTRXKPLPPXGXXPPPPXXXXP 1452
            PT   P PP G  PPPP    P
Sbjct: 276  PTGSPPPPPAGGSPPPPRAGSP 297


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 1387 PTRXKPLPPXGXXPPPPXXXXP 1452
            PT   P PP G  PPPP    P
Sbjct: 297  PTGSPPPPPAGGSPPPPRAGSP 318


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 1387 PTRXKPLPPXGXXPPPPXXXXP 1452
            PT   P PP G  PPPP    P
Sbjct: 282  PTGSPPPPPAGGSPPPPRAGSP 303


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical protein
            C16B8.3 protein.
          Length = 164

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 1372 GXGFXPTRXKPLPPXGXXPPPPXXXXP 1452
            G G  P    P PP G  PPPP    P
Sbjct: 132  GTGATPAGMYPPPPTGQYPPPPPGQYP 158


>AL161712-3|CAC35908.1|  136|Caenorhabditis elegans Hypothetical
           protein Y66D12A.6 protein.
          Length = 136

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 704 EKKSLSXSLAEKMYIRVNWXXXXXXXXXXXNPASNGSRPIPDMF 835
           EKK LS  LAE+M I  +            +PA+ G  P PD+F
Sbjct: 2   EKKPLSKELAEQMSILRSEQATSSSAPEEASPAAPGENP-PDLF 44


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
            109 protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -2

Query: 1136 GXKGVAXXLSGAGXPPLXIXFXXXXPLFPXPXXPPGXRGPXXQSG 1002
            G  G        G PP+        P  P P  PPG +GP   SG
Sbjct: 111  GVPGAPGRPGTPGRPPIVCEEQDVPPCNPCPPGPPGPQGPTGNSG 155


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical protein
            Y49E10.10 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +1

Query: 1387 PTRXKPLPPXGXXPPPPXXXXPKRGGQXXXRPXRXXXPLPXVT 1515
            PT   P PP    PPPP    P         P     P P  T
Sbjct: 170  PTTEAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTT 212


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = +3

Query: 1386 PXPAXTSXXXRXRXPPPXXXXPKTGGAXPLXPXXXXXPPSXGXXK 1520
            P  A TS       P P    P T    PL P     PP+    K
Sbjct: 1531 PTAAATSASTGPIAPEPTTAAPTTTETTPLPPSLAPHPPAAHAAK 1575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,869,307
Number of Sequences: 27780
Number of extensions: 488435
Number of successful extensions: 1185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4535578426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)