Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C11_e563_05.seq
         (1569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   2.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   3.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   5.4  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   7.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 155 IXFNTFLVQWLPFDYCSISE 214
           I    FL+ WLPF  C+I +
Sbjct: 623 IVLGVFLICWLPFFTCNIMD 642


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 377 PVLHNNMFHFKCSVNRLIKKLNALLRRSXAFYIA*VII 264
           P + N  F+  C    L    N  +RR   FY   +II
Sbjct: 216 PAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIII 253


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 377 PVLHNNMFHFKCSVNRLIKKLNALLRRSXAFYIA*VII 264
           P + N  F+  C    L    N  +RR   FY   +II
Sbjct: 216 PAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIII 253


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 377 PVLHNNMFHFKCSVNRLIKKLNALLRRSXAFYIA*VII 264
           P + N  F+  C    L    N  +RR   FY   +II
Sbjct: 212 PAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLII 249


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 524 YITPNYASKSSENRKIFFNRYII 592
           Y   NY + ++ N+K+++  YII
Sbjct: 89  YKYSNYNNYNNYNKKLYYKNYII 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,519
Number of Sequences: 438
Number of extensions: 7577
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55147125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)