Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_C10_e555_06.seq
(1528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 256 3e-68
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 248 9e-66
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 158 9e-39
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 31 1.8
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 30 4.2
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 29 9.7
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 256 bits (628), Expect = 3e-68
Identities = 123/239 (51%), Positives = 165/239 (69%)
Frame = +2
Query: 188 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 367
K VPESV + L + +++ RK IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 368 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 547
+L R+AR +G +YV EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 548 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVED 727
+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC+ED
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186
Query: 728 LIHEIFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTFGTREDKVNELLRRM 904
L+HEI TVG FK A+NFLWPFK + P L ++ G RED +NEL+RRM
Sbjct: 187 LVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDA-GNREDYINELIRRM 244
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 248 bits (607), Expect = 9e-66
Identities = 122/241 (50%), Positives = 164/241 (68%), Gaps = 6/241 (2%)
Frame = +2
Query: 200 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 379
VPESV + + + SI+ RK IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 380 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 559
+AR +G +YV E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 560 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKR------LSKQNIICV 721
R EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+T+N +IE+ L K +IIC+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189
Query: 722 EDLIHEIFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTFGTREDKVNELLRR 901
EDL+HEI TVG FK A+NFLWPFK + P L ++ G RE+ +NEL+RR
Sbjct: 190 EDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDA-GNRENYINELIRR 248
Query: 902 M 904
M
Sbjct: 249 M 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 158 bits (384), Expect = 9e-39
Identities = 86/218 (39%), Positives = 128/218 (58%), Gaps = 3/218 (1%)
Frame = +2
Query: 176 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 355
E +++LP V E+V + +R K KR E +V+E+R KE
Sbjct: 4 EGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNKE 63
Query: 356 RDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVF 526
D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GVF
Sbjct: 64 LDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVF 121
Query: 527 VRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQ 706
++ AT+ L + EP+I +G+PNLK+V++L+YK+G L+ + P+TSN LIEK L +
Sbjct: 122 LKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEY 181
Query: 707 NIICVEDLIHEIFTVGEKFKYASNFLWPFKPEQPDWRL 820
IIC+EDL+HEI +VG F+ ASNFL PFK + P+ RL
Sbjct: 182 GIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRL 219
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 454 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 299
D TN +KC G+ A++ ++S QS I +LDA ++ G ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 30.3 bits (65), Expect = 4.2
Identities = 33/109 (30%), Positives = 45/109 (41%)
Frame = +3
Query: 654 SVSRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSNLNNPTGGWRKKT 833
SVSRSP SR + RT S R S+ RS S + + S +P + ++
Sbjct: 504 SVSRSPVARRSRSPVKARTRSISRSSARSLQRRSRSRSLERSPVRKSVSRSPPTMDKGRS 563
Query: 834 IHYVDXGRLSVPARTRSTSSXGEWPINKIDCIQXXXXXLEGGARXPIRL 980
I GRL P R RS S + P +I +R P+RL
Sbjct: 564 ISRT-SGRL--PLR-RSISRSPDRPYRRIPSRSPRKNTRRSISRSPVRL 608
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 29.1 bits (62), Expect = 9.7
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Frame = +2
Query: 413 GEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGY 592
G+ K I +RG + ++ + +L +LR ++ ++N R+ + WG+
Sbjct: 621 GKMKFLEHIGLRGCHSLAELPSSITELPKLRHLSIDE-TKINAIPRGFKRLENLEMLWGF 679
Query: 593 P-------------NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVE 724
P +L+ + L R + + VP +S + + K +K+N+IC+E
Sbjct: 680 PVHIIIENTGEYRCSLEELGPLSKLRKLKLIGLENVPYSSMATLAKLKTKENLICLE 736
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,251,435
Number of Sequences: 37544
Number of extensions: 606521
Number of successful extensions: 1479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4907691684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -