Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C10_e555_06.seq
         (1528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      293   2e-79
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.26 
SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5)                      30   5.6  
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)           29   7.4  
SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.8  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  293 bits (719), Expect = 2e-79
 Identities = 144/243 (59%), Positives = 174/243 (71%)
 Frame = +2

Query: 176 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 355
           +D  K+P VPE++               +  L ++     KRKEIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 356 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 535
            DE+R+ + A+  GN+YVP EA+LAFVIRIRG+N VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122

Query: 536 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 715
           NKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K++ +RV +T NS++EK L K  II
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGII 182

Query: 716 CVEDLIHEIFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTFGTREDKVNELL 895
           CVEDLIHEIFTVGE FK ASNFLWPFK   P     ++           G REDK+N L+
Sbjct: 183 CVEDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEG-GDHGNREDKINGLV 241

Query: 896 RRM 904
           R M
Sbjct: 242 RVM 244


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 34.3 bits (75), Expect = 0.26
 Identities = 26/76 (34%), Positives = 38/76 (50%)
 Frame = +2

Query: 683 IEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTF 862
           +E  L K N+   E LI+ I  +    KYA+N L P KP   +WR  +   SL R   T+
Sbjct: 95  VENLLEKNNV--KEKLIYTIQALAILEKYATNLLKPMKP--INWRTVKFTSSLVR---TY 147

Query: 863 GTREDKVNELLRRMAY 910
               +   ++LR+M Y
Sbjct: 148 LENIEGSTDILRQMGY 163


>SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5)
          Length = 119

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 709 VLFAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTLQ 599
           VL A +LLDE +G DRD  P Q G+ A      D  Q
Sbjct: 3   VLSAAALLDELMGSDRDLAPDQKGKRAHWSDSEDGAQ 39


>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
          Length = 293

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 1300 RGXSAPLXFLXXXNXXPSGPLXWXPPKXKXXXA 1398
            +G SAP+ +L   N   S P+ W  P  K   A
Sbjct: 147  KGTSAPVTWLAQPNKGTSAPVTWLAPPNKGTSA 179


>SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -1

Query: 709 VLFAKSLLDE*VGGDRDTLPVQFGETA 629
           VL A +LLDE +G DRD  P Q G+ A
Sbjct: 3   VLSAAALLDELMGSDRDLAPDQKGKRA 29


>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 659 HASRSVWRNRVCTPTLGHSSSWGSPMQYRAQRYEACSLWPC*DERTRRC 513
           HA   V   R   P   +S  + +P Q  ++RY A S  PC  ER   C
Sbjct: 586 HAPSQVNSERYNAPNQVNSERYNAPSQVNSERYNAPSQSPC-TERYTPC 633


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,611,558
Number of Sequences: 59808
Number of extensions: 664185
Number of successful extensions: 2025
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2020
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4965079671
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)