Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_C10_e555_06.seq
(1528 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 252 5e-67
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 252 5e-67
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 248 6e-66
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 248 6e-66
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 248 6e-66
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 246 4e-65
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 154 2e-37
At1g31820.1 68414.m03908 amino acid permease family protein weak... 31 2.7
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 30 3.5
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 6.1
At3g52860.1 68416.m05825 expressed protein 29 8.1
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 8.1
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 252 bits (617), Expect = 5e-67
Identities = 123/235 (52%), Positives = 161/235 (68%)
Frame = +2
Query: 200 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 379
VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 380 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 559
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132
Query: 560 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHE 739
R EPY+ +GYPNLKSV+EL+YKRG+ KLN +R+ +T NS++++ L K IICVEDLIHE
Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHE 192
Query: 740 IFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTFGTREDKVNELLRRM 904
I TVG FK A+NFLWPF+ + P L ++ G RE+ +NEL+RRM
Sbjct: 193 IMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDA-GNRENFINELVRRM 246
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 252 bits (617), Expect = 5e-67
Identities = 123/235 (52%), Positives = 161/235 (68%)
Frame = +2
Query: 200 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 379
VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 380 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 559
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 560 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHE 739
R EPY+ +GYPNLKSV+EL+YKRG+ KLN +R+ +T NS++++ L K IICVEDLIHE
Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHE 187
Query: 740 IFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTFGTREDKVNELLRRM 904
I TVG FK A+NFLWPF+ + P L ++ G RE+ +NEL+RRM
Sbjct: 188 IMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDA-GNRENFINELVRRM 241
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 248 bits (608), Expect = 6e-66
Identities = 122/242 (50%), Positives = 164/242 (67%)
Frame = +2
Query: 179 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 358
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 359 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 538
+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 539 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 718
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K IIC
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIIC 182
Query: 719 VEDLIHEIFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTFGTREDKVNELLR 898
VEDLIHEI TVG FK A+NFLWPF+ + P + ++ G RE+ +NEL+R
Sbjct: 183 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDA-GNRENFINELVR 241
Query: 899 RM 904
RM
Sbjct: 242 RM 243
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 248 bits (608), Expect = 6e-66
Identities = 122/242 (50%), Positives = 164/242 (67%)
Frame = +2
Query: 179 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 358
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 359 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 538
+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 539 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 718
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K IIC
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIIC 182
Query: 719 VEDLIHEIFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTFGTREDKVNELLR 898
VEDLIHEI TVG FK A+NFLWPF+ + P + ++ G RE+ +NEL+R
Sbjct: 183 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDA-GNRENFINELVR 241
Query: 899 RM 904
RM
Sbjct: 242 RM 243
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 248 bits (608), Expect = 6e-66
Identities = 122/242 (50%), Positives = 164/242 (67%)
Frame = +2
Query: 179 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 358
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 359 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 538
+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 539 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 718
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K IIC
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIIC 182
Query: 719 VEDLIHEIFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTFGTREDKVNELLR 898
VEDLIHEI TVG FK A+NFLWPF+ + P + ++ G RE+ +NEL+R
Sbjct: 183 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDA-GNRENFINELVR 241
Query: 899 RM 904
RM
Sbjct: 242 RM 243
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 246 bits (601), Expect = 4e-65
Identities = 121/235 (51%), Positives = 159/235 (67%)
Frame = +2
Query: 200 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 379
VPESV Q + + + RK IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 380 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 559
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 560 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHE 739
R EPY+ +G+PNLKSV+EL+YKRG+ KLN +R+ +T NS++E+ L K IIC EDLIHE
Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHE 187
Query: 740 IFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTFGTREDKVNELLRRM 904
I TVG FK A+NFLWPF+ + P L ++ G RE+ +NEL+RRM
Sbjct: 188 ILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDA-GNRENFINELIRRM 241
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 154 bits (373), Expect = 2e-37
Identities = 79/243 (32%), Positives = 130/243 (53%)
Frame = +2
Query: 176 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 355
E++K L +PE V + S KK+ KR E +V E+R KE
Sbjct: 4 EEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAKE 63
Query: 356 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 535
D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF +
Sbjct: 64 VDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKA 123
Query: 536 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 715
+ L +PY+ +GYPN KSV++L+YK+G + G VP+T N++IE+ L + I+
Sbjct: 124 TDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKIL 183
Query: 716 CVEDLIHEIFTVGEKFKYASNFLWPFKPEQPDWRLAQEDXSLRRXRXTFGTREDKVNELL 895
+EDL++EI VG+ F+ FL P K +P + + G REDK+N+L+
Sbjct: 184 GIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKINDLI 243
Query: 896 RRM 904
+M
Sbjct: 244 SKM 246
>At1g31820.1 68414.m03908 amino acid permease family protein weak
similarity to asc-type amino acid transporter 2 [Mus
musculus] GI:18148438; contains Pfam profile PF00324:
Amino acid permease
Length = 482
Score = 30.7 bits (66), Expect = 2.7
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 358 TLLDAVFFDILFGSLKDFFPLLNGSGT-PLECDLKT 254
TL A+ + ++F +L +F PLL+G+G PL+ +L T
Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTGAIPLDRELWT 280
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 30.3 bits (65), Expect = 3.5
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = -1
Query: 769 VLELLTDSKYLMDEILNADDVL----FAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTL 602
V ELL+++ L DE+L DDVL F SLL E RD V L TL
Sbjct: 2031 VQELLSENLNLHDELLRKDDVLKGLSFDLSLLQESASNSRDKKDETKEIMVHVEALEKTL 2090
Query: 601 QVGVAPCNIGLSDTKHVHCGLVETNE 524
+ +S + + L E+ E
Sbjct: 2091 ALKTFELEDAVSHAQMLEVRLQESKE 2116
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 29.5 bits (63), Expect = 6.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 468 GDTWLTPRIRMTNASLASPGT 406
G TW+ P I +N S+ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 269 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 367
LK + IKK +F+ +++ VKE K RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.1 bits (62), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 641 KLNGKRVPITSNSLIEKRLSKQNIICVEDL 730
K+N + + S IEK LS N+ C+E L
Sbjct: 438 KMNNNTISVDSTICIEKHLSAMNLRCIERL 467
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,714,155
Number of Sequences: 28952
Number of extensions: 458062
Number of successful extensions: 1072
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4086763008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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