Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C09_e547_05.seq
         (1540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    66   9e-12
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    65   2e-11
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    28   4.0  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 66.5 bits (155), Expect = 9e-12
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
 Frame = +3

Query: 84  NDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWXXXXXXXXXXXXXXXXXX 263
           N +FTN ILTK Y    +    N   ++  E     G  ++W                  
Sbjct: 215 NPFFTNKILTKTYYYMEESGPSNVFLYDHAE-----GDKVDWKENADLTVRTVTKKQRNK 269

Query: 264 SRGSVRTVTKSVQADSFFNFFSPPTMP-EDPNSTVTSEIQALLTADFEIGHYIRERVVSR 440
           +    R V  SV  DSFFNFF+PPT P E+   + + E+  LL  D++IG   +E+++ R
Sbjct: 270 NTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESESPELDELLELDYQIGEDFKEKLIPR 329

Query: 441 AV 446
           AV
Sbjct: 330 AV 331


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
 Frame = +3

Query: 81  ANDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYS-CKGCDINWXXXXXXXXXXXXXXXX 257
           +NDYFTN ILTK Y  K   DD +P    G  +Y   +G  INW                
Sbjct: 218 SNDYFTNKILTKTYYYK---DDLSP---SGEFLYDHAEGDKINWIKPEKNLTVRVETKKQ 271

Query: 258 XXSR-GSVRTVTKSVQADSFFNFFSPPTMPEDPNSTVTSEIQALLTADFEIGHYIRERVV 434
              +    R V  +V  DSFFNFFSPP + +D +     +   LL  D+++G   +++++
Sbjct: 272 RNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDDESDDGLDDKTELLELDYQLGEVFKDQII 331

Query: 435 SRAV 446
             A+
Sbjct: 332 PLAI 335


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 894 NTLVLTTFTGI*QRYDLKKNWXFKLKKS 977
           +TL L  + G+ +++D KKNW ++   S
Sbjct: 75  STLALKLYEGLDKKFDGKKNWEYRTANS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,901,643
Number of Sequences: 5004
Number of extensions: 64279
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 864227864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)