Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_C09_e547_05.seq
(1540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 61 3e-09
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 59 8e-09
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 59 1e-08
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 58 2e-08
05_03_0077 + 8200529-8200541,8200658-8200701,8200793-8200888,820... 41 0.003
09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720... 33 0.60
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 31 1.8
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 30 5.6
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 60.9 bits (141), Expect = 3e-09
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Frame = +3
Query: 84 NDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWXXXXXXXXXXXXXXXXXX 263
N +F N++LTK Y M D++ P+ + G +I W
Sbjct: 186 NPFFKNSVLTKTYHMV---DEDEPI------LEKAIGTEIEWYPGKNLTQKILKKKPKKG 236
Query: 264 SRGSVRTVTKSVQADSFFNFFSPPTMP---EDPNSTVTSEIQALLTADFEIGHYIRERVV 434
S+ + + +TK+ +SFFNFFSPP +P ED + E+Q + D++IG IR++++
Sbjct: 237 SKNA-KPITKTEVCESFFNFFSPPQVPDDDEDIDEDTADELQGQMEHDYDIGTTIRDKII 295
Query: 435 SRAV 446
AV
Sbjct: 296 PHAV 299
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 59.3 bits (137), Expect = 8e-09
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Frame = +3
Query: 84 NDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWXXXXXXXXXXXXXXXXXX 263
N +F N++LTK Y M D++ P+ + G +I W
Sbjct: 183 NPFFKNSVLTKTYHMI---DEDEPI------LEKAIGTEIEWFPGKCLTQKVLKKKPKKG 233
Query: 264 SRGSVRTVTKSVQADSFFNFFSPPTMPEDP---NSTVTSEIQALLTADFEIGHYIRERVV 434
S+ + + +TK+ +SFFNFFSPP +P+D + ++Q + D++IG IR++++
Sbjct: 234 SKNT-KPITKTENCESFFNFFSPPQVPDDDEEIDEDTAEQLQNQMEQDYDIGSTIRDKII 292
Query: 435 SRAV 446
AV
Sbjct: 293 PHAV 296
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 58.8 bits (136), Expect = 1e-08
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Frame = +3
Query: 84 NDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWXXXXXXXXXXXXXXXXXX 263
N +F N +LTK Y M DDE LE G +I W
Sbjct: 262 NPFFKNQVLTKTYHM-IDEDDEPILE-------KAIGTEIEWHPGYCLTQEVLTKE---- 309
Query: 264 SRGSVRTVTKSVQADSFFNFFSPPTMPEDP---NSTVTSEIQALLTADFEIGHYIRERVV 434
S S + +TK+ + +SFFNFFSPP +P+D + E+Q + D++I +R++++
Sbjct: 310 SSESTKPITKTEECESFFNFFSPPQVPDDDAKIDENTAEELQNQMERDYDIASTLRDKII 369
Query: 435 SRAV 446
AV
Sbjct: 370 PHAV 373
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 57.6 bits (133), Expect = 2e-08
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +3
Query: 84 NDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWXXXXXXXXXXXXXXXXXX 263
N +F N +LTK Y M DDE LE G +I W
Sbjct: 157 NPFFKNQVLTKTYHM-IDEDDEPILE-------KAIGTEIEWHPGNCLTQEVLTKE---- 204
Query: 264 SRGSVRTVTKSVQADSFFNFFSPPTMPEDP---NSTVTSEIQALLTADFEIGHYIRERVV 434
S S + +TK+ + +SFFNFFSPP +PED + E+Q + D++I +R++++
Sbjct: 205 SSESTKPITKTEEYESFFNFFSPPQVPEDDAKIDENTAEELQNQMERDYDIASTLRDKII 264
Query: 435 SRAV 446
V
Sbjct: 265 PHVV 268
>05_03_0077 +
8200529-8200541,8200658-8200701,8200793-8200888,
8201585-8201639,8201753-8201817,8202309-8202434,
8202742-8202903
Length = 186
Score = 40.7 bits (91), Expect = 0.003
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 156 LEFEGP-EIYSCKGCDINWXXXXXXXXXXXXXXXXXXSRGSVRTVTKSVQADSFFNFFSP 332
LE EG E KG W S S + +TK+ + +SFFNFFSP
Sbjct: 60 LEVEGETEEREEKGVPDFWLNAMKKNEILAEEVLTKESSESTKPITKTEECESFFNFFSP 119
Query: 333 PTMPED 350
P +P+D
Sbjct: 120 PQVPDD 125
>09_04_0257 +
16170914-16171113,16171362-16171554,16171929-16172034,
16172293-16172415,16172739-16172830,16173276-16173376,
16173458-16173524,16174016-16174108,16174247-16174375
Length = 367
Score = 33.1 bits (72), Expect = 0.60
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -3
Query: 875 KKKKRESISFSSVRANTKQKRLYYRQF*CY**ELSNYRYTGFDLS 741
K+K+ E+ISF ++ K+ +LY+ F E +Y Y G+D++
Sbjct: 218 KQKRYETISFRKIQDEVKELKLYFIDF-----EYGSYSYRGYDIA 257
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 31.5 bits (68), Expect = 1.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 273 SVRTVTKSVQADSFFNFFSPP-TMPEDPNSTVTSEIQALLTAD 398
S+RT TK + D FN PP + E PNS + + + + D
Sbjct: 186 SIRTFTKEAEKDHLFNCGDPPRILNEPPNSAIQEKNKGTMDID 228
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 29.9 bits (64), Expect = 5.6
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 283 PSPSLCRRIPS-STSSAPPPCRRILTLLSPLK 375
PSP+ +++ T+ APPP +RI T+L P+K
Sbjct: 162 PSPAFLKQLDGLDTTPAPPPTKRI-TVLKPIK 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,606,348
Number of Sequences: 37544
Number of extensions: 448314
Number of successful extensions: 1210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4954100116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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