Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C09_e547_05.seq
         (1540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_20104| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.3  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 84  NDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKG 194
           N +FTN +LTK Y MKC+PD+++P  FEGPEI S  G
Sbjct: 304 NPFFTNTVLTKSYKMKCEPDEDDPFSFEGPEIVSTSG 340


>SB_20104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 280 VPSPSLCRRIPSSTSSAPPPCRRIL 354
           VPSPSL     SS SS+PP C R++
Sbjct: 40  VPSPSLPSPPSSSPSSSPPRCLRVI 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,173,724
Number of Sequences: 59808
Number of extensions: 488110
Number of successful extensions: 1094
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5012030779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)