Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C09_e547_05.seq
         (1540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    85   1e-16
U46673-1|AAC48153.4| 1003|Caenorhabditis elegans Insulin recepto...    30   3.8  
AF025456-3|AAB70956.1|  440|Caenorhabditis elegans Hypothetical ...    29   8.8  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 85.4 bits (202), Expect = 1e-16
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
 Frame = +3

Query: 84  NDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWXXXXXXXXXXXXXXXXXX 263
           N YF N +LTK Y +   PD E PL+F+GP +    G  I W                  
Sbjct: 165 NPYFKNQVLTKTYLLGFDPDAEAPLQFDGPHVIRAVGDTIEWEDGKNVTKKAVKKKQKKG 224

Query: 264 SRGSVRTVTKSVQADSFFNFFSPPTMPEDPNSTVTSE-IQALLTADFEIGHYIRERVVSR 440
           +    + +TK+V+ADSFFNFF PP   ++ N     E  +  L  D+E+G  IR+ ++ R
Sbjct: 225 ANAG-KFLTKTVKADSFFNFFEPPKSKDERNEDEDDEQAEEFLELDYEMGQAIRDTIIPR 283

Query: 441 AVL 449
           AVL
Sbjct: 284 AVL 286


>U46673-1|AAC48153.4| 1003|Caenorhabditis elegans Insulin receptor
           substrate homologprotein 1 protein.
          Length = 1003

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 114 KEYSMKCKPDDENPLEFEGPEIYSCKGC 197
           K  +++  P DE+P EF  PE+Y C  C
Sbjct: 87  KPLAVEDLPKDEDPDEFGIPEVYKCGNC 114


>AF025456-3|AAB70956.1|  440|Caenorhabditis elegans Hypothetical
           protein C46F9.2 protein.
          Length = 440

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 915 FTGI*QRYDLKKNWXFKLKKSAGFFG 992
           +TGI  R+++   W  K+KK +GFFG
Sbjct: 302 YTGIQTRFNIP--WKLKIKKQSGFFG 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,145,044
Number of Sequences: 27780
Number of extensions: 379039
Number of successful extensions: 1002
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4431789446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)