Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C09_e547_05.seq
         (1540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    66   4e-11
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    65   1e-10
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    63   5e-10
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    55   1e-07

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 66.5 bits (155), Expect = 4e-11
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
 Frame = +3

Query: 84  NDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWXXXXXXXXXXXXXXXXXX 263
           N YF N +LTK Y M    D++ PL      +    G +I+W                  
Sbjct: 179 NPYFKNTVLTKSYHMI---DEDEPL------LEKAMGTEIDWYPGKCLTQKILKKKPKKG 229

Query: 264 SRGSVRTVTKSVQADSFFNFFSPPTMP---EDPNSTVTSEIQALLTADFEIGHYIRERVV 434
           S+ + + +TK    +SFFNFFSPP +P   ED +     ++Q L+  D++IG  IRE+++
Sbjct: 230 SKNT-KPITKLEDCESFFNFFSPPEVPDEDEDIDEERAEDLQNLMEQDYDIGSTIREKII 288

Query: 435 SRAV 446
            RAV
Sbjct: 289 PRAV 292


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
 Frame = +3

Query: 84  NDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWXXXXXXXXXXXXXXXXXX 263
           N YF N +LTK Y M    D++ P+      +    G +I W                  
Sbjct: 178 NPYFKNTVLTKTYHMI---DEDEPI------LEKALGTEIEWYPGKCLTQKILKKKPKKG 228

Query: 264 SRGSVRTVTKSVQADSFFNFFSPPTMP---EDPNSTVTSEIQALLTADFEIGHYIRERVV 434
           S+ + + +TK+   +SFFNFFSPP +P   ED +  +  E+Q  +  D++IG  I+E+++
Sbjct: 229 SKNT-KPITKTEDCESFFNFFSPPQVPDDDEDLDDDMADELQGQMEHDYDIGSTIKEKII 287

Query: 435 SRAV 446
           S AV
Sbjct: 288 SHAV 291


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 62.9 bits (146), Expect = 5e-10
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
 Frame = +3

Query: 84  NDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWXXXXXXXXXXXXXXXXXX 263
           N YF N +LTK Y M    D++ PL      +    G +I+W                  
Sbjct: 178 NPYFKNTLLTKAYHMI---DEDEPL------LEKAIGTEIDWYPGKCLTQKILKKKPKKG 228

Query: 264 SRGSVRTVTKSVQADSFFNFFSPPTMP---EDPNSTVTSEIQALLTADFEIGHYIRERVV 434
           ++ + + +TK+   +SFFNFF+PP +P   ED +     E+Q L+  D++IG  IRE+++
Sbjct: 229 AKNA-KPITKTEDCESFFNFFNPPQVPDDDEDIDEERAEELQNLMEQDYDIGSTIREKII 287

Query: 435 SRAV 446
             AV
Sbjct: 288 PHAV 291


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
 Frame = +3

Query: 81  ANDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWXXXXXXXXXXXXXXXXX 260
           +N YF N++L+K Y +    +DE     +GP +    G DI W                 
Sbjct: 180 SNLYFKNSVLSKTYHV----NDE-----DGPVLEKVIGTDIEWFPGKCLTHKVVVKKKTK 230

Query: 261 XSRGSVRTV--TKSVQADSFFNFFSPPTMPE--------DPNSTVTSEIQALLTADFEIG 410
                V  +  TK+   +SFFNFF PP +PE        D ++ +T E+Q L+  D++I 
Sbjct: 231 KGPKKVNNIPMTKTENCESFFNFFKPPEIPEIDEVDDYDDFDTIMTEELQNLMDQDYDIA 290

Query: 411 HYIRERVVSRAV 446
             IR++++  AV
Sbjct: 291 VTIRDKLIPHAV 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,783,005
Number of Sequences: 28952
Number of extensions: 350641
Number of successful extensions: 959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4125317376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)