Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C07_e531_05.seq
         (1508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            66   8e-11
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    66   8e-11
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            66   8e-11
At2g32660.1 68415.m03992 disease resistance family protein / LRR...    33   0.49 
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    33   0.65 
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00...    30   4.6  

>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 65.7 bits (153), Expect = 8e-11
 Identities = 31/59 (52%), Positives = 37/59 (62%)
 Frame = +1

Query: 313 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 489
           GKVHGSLARAGKV+GQTP                  +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
           RIBOSOMAL PROTEIN S30 - Arabidopsis
           thaliana,PID:e1358183
          Length = 62

 Score = 65.7 bits (153), Expect = 8e-11
 Identities = 31/59 (52%), Positives = 37/59 (62%)
 Frame = +1

Query: 313 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 489
           GKVHGSLARAGKV+GQTP                  +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 65.7 bits (153), Expect = 8e-11
 Identities = 31/59 (52%), Positives = 37/59 (62%)
 Frame = +1

Query: 313 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 489
           GKVHGSLARAGKV+GQTP                  +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At2g32660.1 68415.m03992 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-4
           [Lycopersicon hirsutum] gi|2808683|emb|CAA05268
          Length = 589

 Score = 33.1 bits (72), Expect = 0.49
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 139 LDVNGQESIGDIKNRLRLLADVESE-EVTLSMCGAPLEDSCLVSELSSTE 285
           +DV+  +  G I    +++   +S  E    +CG PLE+SCL  +  ST+
Sbjct: 484 IDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEESCLREDAPSTQ 533


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
            (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = -3

Query: 243  GRTAHRQSHLLTLNISKKPEAILDITDGFLTIHVKDVRRLTSNVKLHFVSSYQESL 76
            GR A  +  LL L++    EA++D   GFL  H+ D+ ++   +   +VS + ++L
Sbjct: 1413 GRNATAEEQLLMLSVLVTLEAVIDKLGGFLNPHLGDIMKIMV-LHPEYVSDFDKNL 1467


>At2g43440.1 68415.m05399 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 791

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 138 DVRRLTSNVKLHFVSSYQESLVPNXLQPGGXH*XLG 31
           ++R L+SN+ +  +SSY E+L P  L+P   H  LG
Sbjct: 714 EIRCLSSNINV--ISSYVENLAPLPLKPSHTHHDLG 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,425,929
Number of Sequences: 28952
Number of extensions: 404494
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4028931456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)