Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_C06_e523_06.seq
(1550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 64 3e-10
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 64 3e-10
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 36 0.11
06_01_0539 + 3869156-3869908 35 0.15
06_01_0529 + 3831100-3831852 35 0.15
03_01_0568 - 4192514-4192606,4192694-4192753,4192837-4192932,419... 35 0.15
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 35 0.20
06_01_0479 + 3419657-3420337 35 0.20
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 33 0.80
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 32 1.1
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 64.1 bits (149), Expect = 3e-10
Identities = 29/53 (54%), Positives = 36/53 (67%)
Frame = +2
Query: 254 MVYSGMXPDYRXLVXQAXKMXQQYYLLXHEPIPXXXMVQRVATVMXEYTQSGG 412
+VYSGM PD+R LV ++ K QQYY L E IP +V+ A VM E+TQSGG
Sbjct: 134 VVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGG 186
Score = 33.1 bits (72), Expect = 0.61
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +3
Query: 150 ASNGVVIATENKHKSILYDEHSV 218
A+NGVVIATE K SIL DE SV
Sbjct: 100 AANGVVIATEKKLPSILVDETSV 122
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 64.1 bits (149), Expect = 3e-10
Identities = 29/53 (54%), Positives = 36/53 (67%)
Frame = +2
Query: 254 MVYSGMXPDYRXLVXQAXKMXQQYYLLXHEPIPXXXMVQRVATVMXEYTQSGG 412
+VYSGM PD+R LV ++ K QQYY L E IP +V+ A VM E+TQSGG
Sbjct: 97 VVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGG 149
Score = 47.6 bits (108), Expect = 3e-05
Identities = 39/85 (45%), Positives = 43/85 (50%), Gaps = 23/85 (27%)
Frame = +3
Query: 33 GSERYSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGI---------------------- 146
G +YSFSLTTFSPSGKLV L + G TS+GI
Sbjct: 2 GDSQYSFSLTTFSPSGKLVQIEHALTAV-GSGQTSLGIKGASREAIPSLYFYCVMRIEKG 60
Query: 147 -XASNGVVIATENKHKSILYDEHSV 218
A+NGVVIATE K SIL DE SV
Sbjct: 61 RGAANGVVIATEKKLPSILVDETSV 85
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 35.5 bits (78), Expect = 0.11
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = +3
Query: 42 RYSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATENKHKSILYDEHSV 218
RY ++T FSP G L L + G +VG+ S+ VV+ E K L D SV
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAV-RKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSV 60
Score = 30.3 bits (65), Expect = 4.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 263 SGMXPDYRXLVXQAXKMXQQYYLLXHEPIPXXXMVQRVATVMXEYTQSGG 412
+G+ D R L+ +A Q + L + + + + +A + +YTQSGG
Sbjct: 75 AGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGG 124
>06_01_0539 + 3869156-3869908
Length = 250
Score = 35.1 bits (77), Expect = 0.15
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 36 SERYSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATENKHKSIL 200
S RY T FSP G+L + + + G+++G+ A++GVV+ E K S L
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAI-GNAGSALGVLAADGVVLVGEKKVTSKL 55
Score = 34.7 bits (76), Expect = 0.20
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 263 SGMXPDYRXLVXQAXKMXQQYYLLXHEPIPXXXMVQRVATVMXEYTQSGG 412
+G+ D L+ A Q+Y L EPIP +VQ + YTQ GG
Sbjct: 77 AGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGG 126
>06_01_0529 + 3831100-3831852
Length = 250
Score = 35.1 bits (77), Expect = 0.15
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 36 SERYSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATENKHKSIL 200
S RY T FSP G+L + + + G+++G+ A++GVV+ E K S L
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAI-GNAGSALGVLAADGVVLVGEKKVTSKL 55
Score = 34.7 bits (76), Expect = 0.20
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 263 SGMXPDYRXLVXQAXKMXQQYYLLXHEPIPXXXMVQRVATVMXEYTQSGG 412
+G+ D L+ A Q+Y L EPIP +VQ + YTQ GG
Sbjct: 77 AGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGG 126
>03_01_0568 -
4192514-4192606,4192694-4192753,4192837-4192932,
4193088-4193170,4193289-4193347,4193463-4193559,
4194151-4194232,4194353-4194447,4194585-4194660
Length = 246
Score = 35.1 bits (77), Expect = 0.15
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 45 YSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATENKHKSILYDEHSV 218
Y +T FSP G+L + + G TS+G+ + V + T+ K L D SV
Sbjct: 9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 34.7 bits (76), Expect = 0.20
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 33 GSERYSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATENKHKSILYDEH 212
G RY ++T FSP G L L + G +VG+ ++ VV+ E K L D
Sbjct: 70 GMARYDRAITVFSPDGHLFQVEYALEAV-RKGNAAVGVRGTDTVVLGVEKKSTPKLQDSR 128
Query: 213 SV 218
S+
Sbjct: 129 SM 130
Score = 33.5 bits (73), Expect = 0.46
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 263 SGMXPDYRXLVXQAXKMXQQYYLLXHEPIPXXXMVQRVATVMXEYTQSGG 412
+G+ D R L+ +A Q + L +P+ + + +A + +YTQSGG
Sbjct: 145 AGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG 194
>06_01_0479 + 3419657-3420337
Length = 226
Score = 34.7 bits (76), Expect = 0.20
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 263 SGMXPDYRXLVXQAXKMXQQYYLLXHEPIPXXXMVQRVATVMXEYTQSGG 412
+G+ D L+ A Q+Y L EPIP +VQ + YTQ GG
Sbjct: 53 AGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGG 102
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 32.7 bits (71), Expect = 0.80
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 45 YSFSLTTFSPSGKLVSXPSML*GLXAD-GGTSVGIXASNGVVIATE 179
Y S+TTFSP G++ G D GT VGI +G+V+ E
Sbjct: 8 YDLSVTTFSPDGRVFQVEYA--GKAVDNSGTVVGIKCKDGIVLGVE 51
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 32.3 bits (70), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 45 YSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATE 179
Y S+TTFSP G++ + + GT VGI +G+V+ E
Sbjct: 8 YDLSVTTFSPDGRVFQVEYATKAVD-NSGTVVGIKCKDGIVLGVE 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,076,165
Number of Sequences: 37544
Number of extensions: 148514
Number of successful extensions: 265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5000508548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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