Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C06_e523_06.seq
         (1550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  39   0.012
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            31   1.9  
SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            30   4.3  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 254 MVYSGMXPDYRXLVXQAXKMXQQYYLLXHEPIPXXXMVQRVATVMXEYTQSGGR 415
           M ++G+  D R LV +A    Q + L   +P+    + + +AT+   YTQS GR
Sbjct: 73  MAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGR 126


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 57  LTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATENK 185
           +T FSP G+L        G    G TSVGI  ++  V+ T+ K
Sbjct: 13  ITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQKK 55


>SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2032

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 45  YSFSLTTFSPSGKLVSXPSML*GLXADG-GTSVGIXASNGVVIATENKHK 191
           YS S+   SPSG+++  PSM     A G G    +     +V+A+ NK +
Sbjct: 4   YSASVCQVSPSGRVLGSPSMPGFFSASGTGVEAFLTHDGTLVVASSNKRE 53


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 33  GSERYSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATENKHKSILYD 206
           G  RY  S + FSP G++         +  + GT++ I   +GVV   E    S LY+
Sbjct: 133 GVVRYDLSASQFSPDGRVFQVEYANKAVE-NSGTAIAIRCKDGVVFGVEKLVLSKLYE 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,482
Number of Sequences: 59808
Number of extensions: 167011
Number of successful extensions: 289
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5058981887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)