Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C06_e523_06.seq
         (1550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...    59   1e-08
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    39   0.011
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    34   0.24 

>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score = 58.8 bits (136), Expect = 1e-08
 Identities = 26/52 (50%), Positives = 35/52 (67%)
 Frame = +2

Query: 257 VYSGMXPDYRXLVXQAXKMXQQYYLLXHEPIPXXXMVQRVATVMXEYTQSGG 412
           VYSGM PD+R LV +A K+  +Y ++  E +P   +V  +A VM EYTQSGG
Sbjct: 71  VYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGG 122



 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 29/57 (50%), Positives = 37/57 (64%)
 Frame = +3

Query: 39  ERYSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATENKHKSILYDE 209
           + Y FSLTTFSPSGKL+     L     +G  SVG+ A +GVV+ATEN   S+L D+
Sbjct: 3   DHYGFSLTTFSPSGKLMQIEYAL-NAVKNGQPSVGLRAKDGVVLATENV-GSVLTDD 57


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +3

Query: 36  SERYSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATENKHKSILYDE 209
           + RY    T FSP G+L      +  + +  GT +GI +S G+V+A E K+   L D+
Sbjct: 2   ARRYDSRTTIFSPEGRLYQVEYAMEAI-SHAGTCLGILSSEGIVVAAERKNVHKLLDD 58


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 34.3 bits (75), Expect = 0.24
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 254 MVYSGMXPDYRXLVXQAXKMXQQYYLLXHEPIPXXXMVQRVATVMXEYTQSGGR 415
           + ++G+  D R LV +A    Q Y L   +P+    + + +A     +TQS GR
Sbjct: 72  LAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGR 125



 Score = 32.3 bits (70), Expect = 0.95
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 42  RYSFSLTTFSPSGKLVSXPSML*GLXADGGTSVGIXASNGVVIATENKHKSILYDEHSV 218
           RY  ++T FSP G L         +   G T+VG+   + +VI  E K    L D+ ++
Sbjct: 3   RYDRAITIFSPDGHLFQVEYAQEAV-KKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTI 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,957,446
Number of Sequences: 27780
Number of extensions: 126267
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4473305038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)