Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C05_e515_05.seq
         (1467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   158   2e-39
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    35   0.033
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    31   0.53 
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   8.6  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  158 bits (383), Expect = 2e-39
 Identities = 79/149 (53%), Positives = 104/149 (69%)
 Frame = +3

Query: 66  GHSIVLMGKNTMMRKAIKDHLETNPAXEKLLPHIKGNVGFVFTXGDLVDVRDKLLENKVQ 245
           G + ++MGKNTM+R+A++  +   P  E+LLP ++GNVGFVFT  DL +VR+ ++ N + 
Sbjct: 47  GTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIA 106

Query: 246 APARPGAIAPLFVVIPAXNTGLGPEKTSXFQALSIPTKISKGTIEIINDVHILKPXXXVG 425
           APARP AIAPL V +PA NTG+ P KTS FQAL IPTKI++GTIEI +DVH++     VG
Sbjct: 107 APARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVG 166

Query: 426 AFEAXLLNMLNXXSLFVWFLLAKQGYDSG 512
             EA LLNMLN  S F + +     YD G
Sbjct: 167 PSEATLLNMLN-ISPFTYGMDVLTIYDQG 194


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 72  SIVLMGKNTMMRKAIKDHLETNPAXE--KLLPHIKGNVGFVFTXGDLVDVRDKLLENKVQ 245
           S + MGK  +M KA+    E   A    KL   + G VG +FT     +V     E+ VQ
Sbjct: 63  SRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQ 121

Query: 246 AP-ARPGAIAPLFVVIPA 296
              AR GA+AP   VIPA
Sbjct: 122 NDFARAGAVAPFTHVIPA 139


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 385 IISIVPFEILVGMERAWXKEVFSGPRPVLXAGMTTNNGAMAP 260
           IIS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 5    GSPDNCMALQQMQQIRISXQWSQ 73
            GSP+NC   ++M Q +++ Q++Q
Sbjct: 1090 GSPENCEKAKEMIQEKVASQYTQ 1112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,282
Number of Sequences: 5004
Number of extensions: 43825
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 816655688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)