Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C05_e515_05.seq
         (1467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171...   142   5e-34
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160...   142   6e-34
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164...   142   6e-34
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924...    31   3.0  
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468...    30   5.3  

>08_01_0215 -
           1714224-1714364,1714795-1715187,1715279-1715377,
           1716248-1716316,1716408-1716665
          Length = 319

 Score =  142 bits (345), Expect = 5e-34
 Identities = 75/151 (49%), Positives = 101/151 (66%), Gaps = 2/151 (1%)
 Frame = +3

Query: 66  GHSIVLMGKNTMMRKAIKDHLETNPAXE--KLLPHIKGNVGFVFTXGDLVDVRDKLLENK 239
           G SIVLMGKNT++R+ IK H +     E  +L+P + GNVG +FT GDL +VR+++ + K
Sbjct: 50  GDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYK 109

Query: 240 VQAPARPGAIAPLFVVIPAXNTGLGPEKTSXFQALSIPTKISKGTIEIINDVHILKPXXX 419
           V APAR G +AP+ VV+P  NTGL P +TS FQ L+IPTKI+KGT+EII  V ++K    
Sbjct: 110 VGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169

Query: 420 VGAFEAXLLNMLNXXSLFVWFLLAKQGYDSG 512
           VG+ E+ LL  L     F + L+    YDSG
Sbjct: 170 VGSSESALLAKLGIRP-FSYGLVITNVYDSG 199


>12_01_0211 -
           1601129-1601272,1601670-1602062,1602142-1602240,
           1602920-1602988,1603071-1603328
          Length = 320

 Score =  142 bits (344), Expect = 6e-34
 Identities = 75/151 (49%), Positives = 101/151 (66%), Gaps = 2/151 (1%)
 Frame = +3

Query: 66  GHSIVLMGKNTMMRKAIKDHLET--NPAXEKLLPHIKGNVGFVFTXGDLVDVRDKLLENK 239
           G SIVLMGKNT++R+ IK H +   N    +L+P + GNVG +FT GDL +VR+++ + K
Sbjct: 50  GDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYK 109

Query: 240 VQAPARPGAIAPLFVVIPAXNTGLGPEKTSXFQALSIPTKISKGTIEIINDVHILKPXXX 419
           V APAR G +AP+ VV+P  NTGL P +TS FQ L+IPTKI+KGT+EII  V ++K    
Sbjct: 110 VGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169

Query: 420 VGAFEAXLLNMLNXXSLFVWFLLAKQGYDSG 512
           VG+ E+ LL  L     F + L+    YDSG
Sbjct: 170 VGSSESALLAKLGIRP-FSYGLVITNVYDSG 199


>11_01_0210 -
           1647922-1648065,1648459-1648851,1648930-1649028,
           1649706-1649774,1649877-1650134
          Length = 320

 Score =  142 bits (344), Expect = 6e-34
 Identities = 75/151 (49%), Positives = 101/151 (66%), Gaps = 2/151 (1%)
 Frame = +3

Query: 66  GHSIVLMGKNTMMRKAIKDHLET--NPAXEKLLPHIKGNVGFVFTXGDLVDVRDKLLENK 239
           G SIVLMGKNT++R+ IK H +   N    +L+P + GNVG +FT GDL +VR+++ + K
Sbjct: 50  GDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYK 109

Query: 240 VQAPARPGAIAPLFVVIPAXNTGLGPEKTSXFQALSIPTKISKGTIEIINDVHILKPXXX 419
           V APAR G +AP+ VV+P  NTGL P +TS FQ L+IPTKI+KGT+EII  V ++K    
Sbjct: 110 VGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169

Query: 420 VGAFEAXLLNMLNXXSLFVWFLLAKQGYDSG 512
           VG+ E+ LL  L     F + L+    YDSG
Sbjct: 170 VGSSESALLAKLGIRP-FSYGLVITNVYDSG 199


>02_02_0350 +
           9239138-9240218,9240755-9240906,9241392-9241457,
           9242715-9242951
          Length = 511

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 21  VWLCNRCNRSVFXCSGHSIVLMGKNTMM-RKAIKDHLETNPAXEKLLPHIKGNVGFVFTX 197
           VW  N C+  +  CS  S+  M  NTM+ R  +K+  +     E+    I G  G     
Sbjct: 234 VWFPNLCSLEIRNCSKLSLPPMPHNTMLTRVTVKEDNQAKLHFEEETLRIDG-YGGALAF 292

Query: 198 GDLVDVRDKLLEN 236
            +L  V+D  +EN
Sbjct: 293 HNLDKVKDMTIEN 305


>04_04_0369 -
           24745140-24745510,24746005-24746089,24746746-24746878,
           24747764-24748584
          Length = 469

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   RGSPDNCMALQQMQQIRISXQWSQHCAHGQKHH 100
           R    + +A QQ+QQ++I  Q  Q   H Q+HH
Sbjct: 391 RSHIQSLLAAQQLQQLQIHSQHQQQQMHLQQHH 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,374,253
Number of Sequences: 37544
Number of extensions: 321992
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4675649524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)