Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C05_e515_05.seq
         (1467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   186   3e-47
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    36   0.073
AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    35   0.17 
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    29   6.3  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  186 bits (454), Expect = 3e-47
 Identities = 91/149 (61%), Positives = 112/149 (75%)
 Frame = +3

Query: 66  GHSIVLMGKNTMMRKAIKDHLETNPAXEKLLPHIKGNVGFVFTXGDLVDVRDKLLENKVQ 245
           GH+ +LMGKNTM+RKA++ HL  NP+ EKLLPHI  NVGFVFT  DL ++R KLLEN+  
Sbjct: 49  GHAEILMGKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKG 108

Query: 246 APARPGAIAPLFVVIPAXNTGLGPEKTSXFQALSIPTKISKGTIEIINDVHILKPXXXVG 425
           APA+ GAIAP  V +P  NTG+GPEKTS FQAL IPTKI++GTIEI+NDVH++K    VG
Sbjct: 109 APAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVG 168

Query: 426 AFEAXLLNMLNXXSLFVWFLLAKQGYDSG 512
           A E+ LLNML     F + L+ +Q YD G
Sbjct: 169 ASESALLNMLGVTP-FSYGLVVRQVYDDG 196


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 35.9 bits (79), Expect = 0.073
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 3/129 (2%)
 Frame = +3

Query: 69  HSIVLMGKNTMMRKAIKDHLETNPAXE--KLLPHIKGNVGFVFTXGDLVDVRDKLLENKV 242
           +S    GKN ++  A+        A +  K    +KG  G +FT     +V  +  E   
Sbjct: 63  NSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASE 122

Query: 243 QAPARPGAIAPLFVVIPAXN-TGLGPEKTSXFQALSIPTKISKGTIEIINDVHILKPXXX 419
           +  AR G +A   VV+P    +          + L +PTK+ KG I +     + K    
Sbjct: 123 EDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEP 182

Query: 420 VGAFEAXLL 446
           +   +A +L
Sbjct: 183 LTVEQAKIL 191


>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 27  LCNRCNRSVFXCSGHSIVLMGKNTMMRKAIKDHLETNPAXEKLLPHIKGNVG 182
           +CN C +  + C  +SIV    N  M+  I+ +L  +P    L P   G+ G
Sbjct: 142 VCNSCQKPSYFCDENSIVSAPTNLAMQNVIRRYLLAHPDKAFLTPSCSGSSG 193


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 301 LXAGMTTNNGAMAPGRAGAWTLFSNSLSRTSTRSPXVKTKPT 176
           + A  TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 187 IKAHETTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,357
Number of Sequences: 27780
Number of extensions: 261676
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4204297912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)