Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C05_e515_05.seq
         (1467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   143   3e-34
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   143   3e-34
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      142   7e-34

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  143 bits (346), Expect = 3e-34
 Identities = 74/151 (49%), Positives = 102/151 (67%), Gaps = 2/151 (1%)
 Frame = +3

Query: 66  GHSIVLMGKNTMMRKAIKDHLET--NPAXEKLLPHIKGNVGFVFTXGDLVDVRDKLLENK 239
           G S+VLMGKNTMM+++++ H E   N A   LLP ++GNVG +FT GDL +V +++ + K
Sbjct: 49  GDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYK 108

Query: 240 VQAPARPGAIAPLFVVIPAXNTGLGPEKTSXFQALSIPTKISKGTIEIINDVHILKPXXX 419
           V APAR G +AP+ VV+   NTGL P +TS FQ L+IPTKI+KGT+EII  V ++K    
Sbjct: 109 VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDK 168

Query: 420 VGAFEAXLLNMLNXXSLFVWFLLAKQGYDSG 512
           VG+ EA LL  L     F + L+ +  YD+G
Sbjct: 169 VGSSEAALLAKLGIRP-FSYGLVVQSVYDNG 198


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  143 bits (346), Expect = 3e-34
 Identities = 74/151 (49%), Positives = 102/151 (67%), Gaps = 2/151 (1%)
 Frame = +3

Query: 66  GHSIVLMGKNTMMRKAIKDHLET--NPAXEKLLPHIKGNVGFVFTXGDLVDVRDKLLENK 239
           G S+VLMGKNTMM+++++ H E   N A   LLP ++GNVG +FT GDL +V +++ + K
Sbjct: 49  GDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYK 108

Query: 240 VQAPARPGAIAPLFVVIPAXNTGLGPEKTSXFQALSIPTKISKGTIEIINDVHILKPXXX 419
           V APAR G +AP+ VV+   NTGL P +TS FQ L+IPTKI+KGT+EII  V ++K    
Sbjct: 109 VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDK 168

Query: 420 VGAFEAXLLNMLNXXSLFVWFLLAKQGYDSG 512
           VG+ EA LL  L     F + L+ +  YD+G
Sbjct: 169 VGSSEAALLAKLGIRP-FSYGLVVQSVYDNG 198


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  142 bits (343), Expect = 7e-34
 Identities = 73/151 (48%), Positives = 102/151 (67%), Gaps = 2/151 (1%)
 Frame = +3

Query: 66  GHSIVLMGKNTMMRKAIKDHLET--NPAXEKLLPHIKGNVGFVFTXGDLVDVRDKLLENK 239
           G S+VLMGKNTMM+++++ H +   N A   LLP ++GNVG +FT GDL +V +++ + K
Sbjct: 50  GDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYK 109

Query: 240 VQAPARPGAIAPLFVVIPAXNTGLGPEKTSXFQALSIPTKISKGTIEIINDVHILKPXXX 419
           V APAR G +AP+ VV+   NTGL P +TS FQ L+IPTKI+KGT+EII  V ++K    
Sbjct: 110 VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169

Query: 420 VGAFEAXLLNMLNXXSLFVWFLLAKQGYDSG 512
           VG+ EA LL  L     F + L+ +  YD+G
Sbjct: 170 VGSSEAALLAKLGIRP-FSYGLVVESVYDNG 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,970,092
Number of Sequences: 28952
Number of extensions: 249361
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3893991168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)