Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_C04_e507_06.seq
(1503 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 7e-23
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 32 1.4
SB_8600| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086) 31 1.8
SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.2
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 30 5.5
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 30 5.5
SB_56052| Best HMM Match : Mpv17_PMP22 (HMM E-Value=2.7) 29 9.6
SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6
SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8) 29 9.6
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44) 29 9.6
>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 85.8 bits (203), Expect(2) = 7e-23
Identities = 39/60 (65%), Positives = 45/60 (75%)
Frame = +1
Query: 169 PSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGTKGASIPPP 348
PSVRKTH GRKHK+NV+FYYQKWMEEQAQ LID TTAAF++ +Q P +PPP
Sbjct: 160 PSVRKTHNNGRKHKENVRFYYQKWMEEQAQTLIDQTTAAFQSKPNSQMPPNAPPGLMPPP 219
Score = 40.7 bits (91), Expect(2) = 7e-23
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 124 KYYCDYCDTYLTHDSPSV 177
+YYCDYCDT+LTHDS S+
Sbjct: 111 RYYCDYCDTFLTHDSNSL 128
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 31.9 bits (69), Expect = 1.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 88 CDLLGNCIVKMPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 222
C L KM +YYC CD ++ +S + H T +H+D +K
Sbjct: 769 CQALSPGGTKMGQYYCQDCD--ISMNSIKQMEQHMTSARHRDGLK 811
>SB_8600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 31.9 bits (69), Expect = 1.4
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 432 NDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTP 584
N+G +P+G + + + ++G T G G PNG +TTP
Sbjct: 82 NEGQTKPNGGGSEGQTTPNGGGSEGQTTPNGGGSEGQTTPNGGGSEGQTTP 132
Score = 30.3 bits (65), Expect = 4.2
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 423 TSANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTP 584
+S + GS +P G + + ++G T G G PNG +TTP
Sbjct: 68 SSTSGGSSQPGGGGNEGQTKPNGGGSEGQTTPNGGGSEGQTTPNGGGSEGQTTP 121
>SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)
Length = 502
Score = 31.5 bits (68), Expect = 1.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 121 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 219
P+Y+C+ CD+ H +++ H G KH+ NV
Sbjct: 278 PRYHCELCDSKFDH---NLKFPHLVGAKHRFNV 307
>SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 31.1 bits (67), Expect = 2.4
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +3
Query: 423 TSANDGSRRPHGATYDDGPSWSNASNDGNETTYDG--PINGSYGPNGADGTDETTPYECT 596
TS ND + + + +D S++NA++ + T+Y+ N + N A ++ T Y
Sbjct: 436 TSCNDATSYNNATSCNDATSYNNATSCNDATSYNNATSCNDATSYNNATSCNDATLYNNA 495
Query: 597 TNE*TVKTWCVMCTCF*T*SYYN 665
T+ ++ + +C SY N
Sbjct: 496 TSCNDATSYNIATSCNDATSYNN 518
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 423 TSANDGSRRPHGATYDDGPSWSNASNDGNETTYDG--PINGSYGPNGADGTDETTPYECT 596
TS ND + + + +D ++NA++ + T+Y+ P N + N A ++ T Y
Sbjct: 556 TSCNDATSYNNATSCNDATLYNNATSCNDATSYNNATPYNSATSYNNATSCNDATSYNNA 615
Query: 597 TN 602
T+
Sbjct: 616 TS 617
Score = 30.3 bits (65), Expect = 4.2
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 423 TSANDGSRRPHGATYDDGPSWSNASNDGNETTYDG--PINGSYGPNGADGTDETTPYECT 596
TS ND + + Y+ S++NA++ + T+Y+ N + N A ++ T Y
Sbjct: 580 TSCNDATSYNNATPYNSATSYNNATSCNDATSYNNATSCNDATSYNNATSCNDATLYNNA 639
Query: 597 TNE*TVKTW 623
T+ +W
Sbjct: 640 TSCNDATSW 648
>SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 30.7 bits (66), Expect = 3.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 420 DTSANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDE 575
D S +DG G DDG S + +DG++ DG +GS G DG+D+
Sbjct: 221 DGSDDDGGDNDDGGDNDDG-SDDDGGDDGSDD--DGGDDGSDDDGGDDGSDD 269
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 29.9 bits (64), Expect = 5.5
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 417 HDTSANDGSRRPHGATYDDGPSWSNASNDGNET-TYDGP-INGSYGPNGADGTDETTPYE 590
HDT D +R PHG +D P+ + +D N T T GP N + P+G TP+
Sbjct: 87 HDT---DTTRTPHG--HDTDPTQTQHGHDTNPTQTQHGPHTNPTQTPHGPHTDPTWTPHR 141
Query: 591 CTTN 602
T+
Sbjct: 142 PNTD 145
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 29.9 bits (64), Expect = 5.5
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 420 DTSANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETT 581
D +N + +GA +DG SN +NDG++ + +G +G NGA+ D+ T
Sbjct: 205 DDVSNGANDVSNGA--NDGDDVSNVANDGDDVS-NGANDGDDVSNGANDCDDVT 255
>SB_56052| Best HMM Match : Mpv17_PMP22 (HMM E-Value=2.7)
Length = 215
Score = 29.1 bits (62), Expect = 9.6
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -2
Query: 938 EILKXLRLKHNKLILVKNRIEHIDRIDNKPVFFLNIYLLQIIKLH*CFYIRTKSDN 771
EIL L + L K + H+ ++ KP+ + + + +I H CF+I T +DN
Sbjct: 148 EILHSKHLSSSDLRGPKAEVRHLIPMNRKPLGIVRVPVHTLI--HTCFFIDTGNDN 201
>SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1052
Score = 29.1 bits (62), Expect = 9.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 241 SIFDSKISHCLYVFYLYSEFS*HLASHELNMCHNNHNNISAFLLYNSLTDHNKPPS 74
SI S+ H + F +Y E S H + + +N A +LY+ L+ HN S
Sbjct: 965 SIDKSRSLHTIDPFIIYEELSTHTKDPNVIYDELSTHNNDASVLYDELSTHNNDAS 1020
>SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8)
Length = 929
Score = 29.1 bits (62), Expect = 9.6
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 429 ANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGA-DGTD 572
A+DG +GA+ DG SN ++DG++ + +G +G NGA DG D
Sbjct: 639 ASDGDDVSNGAS--DGDDVSNGASDGDDVS-NGASDGDDVSNGASDGAD 684
Score = 29.1 bits (62), Expect = 9.6
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 429 ANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGA-DGTD 572
A+DG +GA+ DG SN ++DG++ + +G +G+ NGA DG D
Sbjct: 649 ASDGDDVSNGAS--DGDDVSNGASDGDDVS-NGASDGADVSNGASDGDD 694
>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
Length = 2581
Score = 29.1 bits (62), Expect = 9.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 151 YLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQ 252
YL DS V + + T K +VKF+Y+K +E++
Sbjct: 2150 YLHTDSSKVLQMNATVAKRSMDVKFFYEKGIEQK 2183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,202,298
Number of Sequences: 59808
Number of extensions: 680396
Number of successful extensions: 1742
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4871177455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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