Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C04_e507_06.seq
         (1503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   1.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   6.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   9.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   9.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 136 HNNISAFLLYNSLTDHNKPPSCRIXCSPGDXTSX*SGRHRGEXQ 5
           +N++S+ +  N + + N P    I C P + T   SG   G  +
Sbjct: 217 NNHVSSKVEGNGVHEENSPLEDNIKCEPLELTGGNSGNAAGNNE 260


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 959 TTFILNNEILKXLR 918
           T FILNNEI++ ++
Sbjct: 203 TVFILNNEIIRSIQ 216


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 453 HGATYDDGPSWSNASNDGNETTYDG 527
           HG  Y D   +SN   + N   Y+G
Sbjct: 276 HGLYYVDTEQFSNPQYEENNVQYEG 300


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 175 VRKTHCTGRKHKDNVK 222
           +R THC      DN++
Sbjct: 409 IRNTHCVNNNQNDNIQ 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,325
Number of Sequences: 438
Number of extensions: 6865
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52515375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)