Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C03_e499_05.seq
         (1551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024    116   4e-26
06_01_0367 - 2636487-2636498,2636655-2636724,2636831-2636937,263...   112   8e-25
01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333...    49   9e-06
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   9.9  

>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
          Length = 143

 Score =  116 bits (280), Expect = 4e-26
 Identities = 54/111 (48%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
 Frame = +2

Query: 419 FGRA-RATTNEKIVLASMFYPLFALACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFI 595
           +G A R  TN+ + LAS+++ + A++ QLSP P   GI+ L +  F L CFQ+LTG KF 
Sbjct: 24  YGSAGRTDTNDSLRLASLWHSMHAISQQLSPTPGCEGIDLLQAHNFDLHCFQSLTGTKFF 83

Query: 596 IVTDPNMQGAEVVLKRIYELYSDYALKSPFYSLEMPIRCELFDTSLHTLLE 748
            V +   Q  E +LK IYELY+D+ LK+PFY +EMPIRCELFD +L  +++
Sbjct: 84  AVCETGAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFDLNLAQVIQ 134



 Score = 29.5 bits (63), Expect = 7.5
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 134 IYGVYIVSKSGGLIYNYDH 190
           IY ++I++KSGGLIY  D+
Sbjct: 6   IYSLFIINKSGGLIYYKDY 24


>06_01_0367 -
           2636487-2636498,2636655-2636724,2636831-2636937,
           2637208-2637226,2637383-2637470,2638175-2638303,
           2638428-2638506,2639658-2639720,2640437-2640535,
           2641583-2641740,2642926-2643094,2643174-2643239
          Length = 352

 Score =  112 bits (269), Expect = 8e-25
 Identities = 53/106 (50%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
 Frame = +2

Query: 419 FGRA-RATTNEKIVLASMFYPLFALACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFI 595
           +G A R  TN+ + LAS+++ + A++ QLSP     GI+ L +  F L CFQ+LTG KF 
Sbjct: 24  YGSAGRTDTNDSLRLASLWHSMHAISQQLSPTHGCEGIDLLQAHNFDLHCFQSLTGTKFF 83

Query: 596 IVTDPNMQGAEVVLKRIYELYSDYALKSPFYSLEMPIRCELFDTSL 733
            V +   Q  E +LK IYELY+D+ LK+PFY +EMPIRCELFD +L
Sbjct: 84  AVCETGAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFDLNL 129



 Score = 29.9 bits (64), Expect = 5.7
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 122 STMVIYGVYIVSKSGGLIYNYDH 190
           ++  IY ++I++KSGGLIY  D+
Sbjct: 2   ASAAIYSLFIINKSGGLIYYKDY 24


>01_05_0102 -
           18131640-18131655,18132928-18133046,18133186-18133300,
           18134072-18134325
          Length = 167

 Score = 49.2 bits (112), Expect = 9e-06
 Identities = 20/56 (35%), Positives = 35/56 (62%)
 Frame = +2

Query: 542 SDTFKLSCFQTLTGVKFIIVTDPNMQGAEVVLKRIYELYSDYALKSPFYSLEMPIR 709
           ++T+KL+  ++ +G+K I++T P        LK IY LY +Y +K+P Y+   PI+
Sbjct: 108 TNTYKLNFLESPSGIKLILITHPRTGDQRDTLKHIYNLYVEYVVKNPLYAPGTPIK 163


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
 Frame = +2

Query: 1253 PXRGTXRXALDXPXVXGGXPXPRXPYXG-------PPXXGXXGPXXXPXPPLXRGV 1399
            P  G    A   P +  G P P  P  G       PP  G  G    P PPL  G+
Sbjct: 1090 PTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGI 1145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,451,750
Number of Sequences: 37544
Number of extensions: 671552
Number of successful extensions: 1091
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5000508548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)