Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C03_e499_05.seq
         (1551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)              249   5e-66
SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         29   7.6  

>SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score =  249 bits (609), Expect = 5e-66
 Identities = 119/220 (54%), Positives = 161/220 (73%), Gaps = 1/220 (0%)
 Frame = +2

Query: 128 MVIYGVYIVSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVG 307
           M I+ VYI++++GGLIY++DH  PK E EKT+ YPL+I L  ++K  V+ FG RD +   
Sbjct: 1   MAIFSVYILNRAGGLIYHFDHYTPKSEVEKTYSYPLEITLRGDDKLEVI-FGARDNVKA- 58

Query: 308 NVLLTVNGSPVNGKTTDDGREVFDILEIKENYPLNLKFGRARATTNEKIVLASMFYPLFA 487
                +NG  V G+   DG +V + L  KENYP++LKFGRA+  TNE+I+LASMF+PLFA
Sbjct: 59  -----INGENVVGRKLPDGTDVMEFLANKENYPISLKFGRAKLKTNERIMLASMFHPLFA 113

Query: 488 LACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVTDPNMQGAEVVLKRIYELYSDY 667
           +A +LSP  +SSGIE L +D+FKL CFQ++TG+KFI++TDP   G + +LK+IYELY D+
Sbjct: 114 IAAKLSPEQRSSGIEVLEADSFKLHCFQSMTGLKFIVLTDPRQVGMDGLLKKIYELYGDF 173

Query: 668 ALKSPFYSLEMPIRCELFDTSLHTLL-ELVEKSGAANLXP 784
           ALK+PFYSL+MPIRCELFD +L   L +  EKSG  +  P
Sbjct: 174 ALKNPFYSLDMPIRCELFDLNLQKALDQAAEKSGLYSSNP 213


>SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +2

Query: 242 KLHHENKKIVVSFGQRDGINVGNVLLTVNGSPVNGKTTDDGREVFDILEIKENYPL-NLK 418
           KL H   K   SFG+ DGI +  V      SP    T  D R       I +NY L  +K
Sbjct: 50  KLWHFITKNYHSFGRLDGILLAYVAERARDSP----TLGDSRNQHPNHRIPQNYSLRTIK 105

Query: 419 FGRARATTNEKIVLASMFYPLFALAC 496
               R +T     LA+    +F + C
Sbjct: 106 RSEIRGSTGSPPTLANEDNTIFIIQC 131


>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 497 QLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVTD 607
           QLS + +  G+     DTFKL+CF TL   K +  TD
Sbjct: 703 QLSVIQQLMGLYREDEDTFKLACF-TLEYAKILQTTD 738


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,985,775
Number of Sequences: 59808
Number of extensions: 696481
Number of successful extensions: 1427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5058981887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)