Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_C03_e499_05.seq
(1551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53181-6|AAA93486.1| 224|Caenorhabditis elegans Hypothetical pr... 197 2e-50
AF125956-1|AAV28359.1| 472|Caenorhabditis elegans Hypothetical ... 34 0.24
U29244-17|AAC71097.2| 314|Caenorhabditis elegans Galectin prote... 33 0.54
AB038506-1|BAB11971.1| 314|Caenorhabditis elegans galectin LEC-... 33 0.54
Z81107-5|CAB03232.1| 203|Caenorhabditis elegans Hypothetical pr... 31 2.9
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 31 2.9
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 31 2.9
AF036695-3|ABD63231.1| 193|Caenorhabditis elegans Hypothetical ... 29 8.9
>U53181-6|AAA93486.1| 224|Caenorhabditis elegans Hypothetical
protein F36D4.2 protein.
Length = 224
Score = 197 bits (480), Expect = 2e-50
Identities = 93/217 (42%), Positives = 146/217 (67%), Gaps = 4/217 (1%)
Frame = +2
Query: 134 IYGVYIVSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVGNV 313
I ++I++++G LIY+++ E EKT+ +P+D+ L ++K VV FG++DGI +
Sbjct: 5 IQHLFIINRAGSLIYSWEARTETPEVEKTYEWPIDVHLEEVDQKAVVVFGEKDGIKLRYY 64
Query: 314 LLTVNGSPVNGKTTDDGREVFDILEI---KENYPLNLKFGRARATTNEKIVLASMFYPLF 484
+ +VNG V+G G + ++LE +++YP+ +KF +TNEKI+L+SMF+ LF
Sbjct: 65 VKSVNGETVSGTRLQLGAQQVNVLEYLQEEDHYPVTVKFAAPTVSTNEKIILSSMFHSLF 124
Query: 485 ALACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVTDPNMQ-GAEVVLKRIYELYS 661
+A QLSP KSSG+E L + FKL C Q+ TGVKF+++T A+ +L ++YELY+
Sbjct: 125 TIAVQLSPCQKSSGVEVLETTQFKLFCLQSRTGVKFVVITSAASNIAADSLLSKMYELYT 184
Query: 662 DYALKSPFYSLEMPIRCELFDTSLHTLLELVEKSGAA 772
D+ALK+PFYS++MPIR + FD ++ TLLE EK+ A
Sbjct: 185 DFALKNPFYSIDMPIRAQKFDEAIKTLLERAEKNNGA 221
>AF125956-1|AAV28359.1| 472|Caenorhabditis elegans Hypothetical
protein DC2.3b protein.
Length = 472
Score = 34.3 bits (75), Expect = 0.24
Identities = 16/79 (20%), Positives = 39/79 (49%)
Frame = +2
Query: 434 ATTNEKIVLASMFYPLFALACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVTDPN 613
A E ++ M + + +L+ + + + +K++ ++ T +K ++ TDPN
Sbjct: 30 APIQEYKLVFGMMLSMKSFVDRLATNDSNQTVNYYKTSAYKMTFLESATSIKIMLNTDPN 89
Query: 614 MQGAEVVLKRIYELYSDYA 670
G +L +IY+ +++ A
Sbjct: 90 ATGIRDLLHKIYQTWTETA 108
>U29244-17|AAC71097.2| 314|Caenorhabditis elegans Galectin protein
5 protein.
Length = 314
Score = 33.1 bits (72), Expect = 0.54
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +2
Query: 224 GYPLDIKLHHENKK--IVVSFGQRDGINVGNVLLT-VNGSPVN-GKTTDDGREVFDILEI 391
G +++ L+ ENK+ + VS +G V N + + V G GK D ++VFDI I
Sbjct: 206 GKRVNVNLYRENKEYALQVSIRYNEGAVVRNAMTSNVWGKEEREGKMPLDKKQVFDITII 265
Query: 392 KENYPLNLKFGRARATT 442
E Y + R TT
Sbjct: 266 NEEYSFQIFLNNERFTT 282
>AB038506-1|BAB11971.1| 314|Caenorhabditis elegans galectin LEC-5
protein.
Length = 314
Score = 33.1 bits (72), Expect = 0.54
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +2
Query: 224 GYPLDIKLHHENKK--IVVSFGQRDGINVGNVLLT-VNGSPVN-GKTTDDGREVFDILEI 391
G +++ L+ ENK+ + VS +G V N + + V G GK D ++VFDI I
Sbjct: 206 GKRVNVNLYRENKEYALQVSIRYNEGAVVRNAMTSNVWGKEEREGKMPLDKKQVFDITII 265
Query: 392 KENYPLNLKFGRARATT 442
E Y + R TT
Sbjct: 266 NEEYSFQIFLNNERFTT 282
>Z81107-5|CAB03232.1| 203|Caenorhabditis elegans Hypothetical
protein R07H5.7 protein.
Length = 203
Score = 30.7 bits (66), Expect = 2.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 633 TTSAPCMFGSVTIINFTPVNVWKHDNLNVSDVKVS 529
+T+ P F SV + NFT + +W++ L ++D+ S
Sbjct: 55 STNQPKRFQSVIVSNFTFIKIWEYIPLKINDLLAS 89
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein 34
protein.
Length = 299
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = +3
Query: 1164 GTPXLPXXXXIPXQXXPXXWGXPXPSL*TGPXGEPXGXPSTXLXXGGAXQXPG 1322
G P P +P Q P G P P GP G P G P G Q PG
Sbjct: 196 GAPGTPGEPGVPAQSEPLIPGEPGPPGEAGPQGPP-GSPGQPGADGSPGQ-PG 246
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular collagen
RAM-4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = +3
Query: 1164 GTPXLPXXXXIPXQXXPXXWGXPXPSL*TGPXGEPXGXPSTXLXXGGAXQXPG 1322
G P P +P Q P G P P GP G P G P G Q PG
Sbjct: 196 GAPGTPGEPGVPAQSEPLIPGEPGPPGEAGPQGPP-GSPGQPGADGSPGQ-PG 246
>AF036695-3|ABD63231.1| 193|Caenorhabditis elegans Hypothetical
protein F16B3.3 protein.
Length = 193
Score = 29.1 bits (62), Expect = 8.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 293 HLFDQMKRLFFYFHDVI*CQVDTRMF-FQFPLSECC 189
H FDQ+ +LF+Y + +V R+F F L CC
Sbjct: 132 HDFDQVTQLFYYSEKFVAKEVHNRLFVLGFSLMFCC 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,457,427
Number of Sequences: 27780
Number of extensions: 573497
Number of successful extensions: 1305
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4473305038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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