Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C03_e499_05.seq
         (1551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02280.1 68418.m00151 synbindin, putative similar to Swiss-Pr...   119   5e-27
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr...    62   7e-10
At5g59130.1 68418.m07411 subtilase family protein contains simil...    33   0.51 
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4...    33   0.51 
At5g48720.1 68418.m06030 expressed protein                             32   1.2  
At4g25990.2 68417.m03742 expressed protein                             31   2.7  
At4g25990.1 68417.m03741 expressed protein                             31   2.7  
At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein si...    29   6.2  
At1g19430.1 68414.m02421 dehydration-responsive protein-related ...    29   6.2  

>At5g02280.1 68418.m00151 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 141

 Score =  119 bits (287), Expect = 5e-27
 Identities = 54/103 (52%), Positives = 74/103 (71%)
 Frame = +2

Query: 425 RARATTNEKIVLASMFYPLFALACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVT 604
           + R  TN+ + +AS+++ + A++ QLSPV   SGIE L +DTF L CFQ+L G KF +V 
Sbjct: 25  KGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIELLEADTFDLHCFQSLPGTKFFVVC 84

Query: 605 DPNMQGAEVVLKRIYELYSDYALKSPFYSLEMPIRCELFDTSL 733
           +P     E +L+ IYELY+DY LK+PFY +EMPIRCELFD +L
Sbjct: 85  EPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRCELFDINL 127


>At1g51160.1 68414.m05752 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 169

 Score = 62.5 bits (145), Expect = 7e-10
 Identities = 29/64 (45%), Positives = 42/64 (65%)
 Frame = +2

Query: 542 SDTFKLSCFQTLTGVKFIIVTDPNMQGAEVVLKRIYELYSDYALKSPFYSLEMPIRCELF 721
           ++T+KLS  +T +G+K I+VT P        LK IY LY +Y +K+P YS   PI+ ELF
Sbjct: 98  TNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELF 157

Query: 722 DTSL 733
           +T+L
Sbjct: 158 NTAL 161


>At5g59130.1 68418.m07411 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 732

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
 Frame = +2

Query: 323 VNGSPVNGKTTDDGREVFDILEIKENYPLN-LKFGRARATTNEKIVLASMFYPLFALACQ 499
           +NG PV+G   DD   V    + +++     LK       T  KI+  S   P   +A  
Sbjct: 417 INGLPVSGLQKDDFESVLSYFKSEKSPEAAVLKSESIFYQTAPKILSFSSRGPNIIVADI 476

Query: 500 LSPVPKSSGIETLTSDTFKLSCFQTLTGVKFII-----VTDPNMQGAEVVLKRIYELYSD 664
           L P   + G+E L +++ + S F     VK+ +     ++ P+  G    +K  +  +S 
Sbjct: 477 LKPDITAPGLEILAANSLRASPFYDTAYVKYSVESGTSMSCPHAAGVAAYVKTFHPQWSP 536

Query: 665 YALKS 679
             +KS
Sbjct: 537 SMIKS 541


>At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663
            from (Arabidopsis thaliana)
          Length = 1520

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 16/62 (25%), Positives = 36/62 (58%)
 Frame = -3

Query: 787  LRLQISGAGLLDELEQRVQRRIEQLASYRHLERVERALEGVVRVQLIDPLQDYLCTLHVR 608
            L++     G L + + ++++R+E+L+   HLE+  R      +VQ +  LQ+ L T+ ++
Sbjct: 874  LKMAARDTGALKDAKNKLEQRVEELSLRLHLEKRLRTDLEEAKVQEVAKLQEALHTMRLQ 933

Query: 607  IR 602
            ++
Sbjct: 934  LK 935


>At5g48720.1 68418.m06030 expressed protein
          Length = 286

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = -1

Query: 570 WKHDNLNVSDVKVSIPDDLGTGL-S*QASAKRG*NMLANTIFSLV---VARARPNFKFKG 403
           W  D LN ++  + +PDDL  G    Q       N+   T    V   V R+ PN  FKG
Sbjct: 139 WYADCLNDAETPM-LPDDLNFGSPDVQVDISEYLNVPPETETREVQRPVTRSSPNVIFKG 197

Query: 402 *FSLISKISNTSLPSSVVFPF 340
             S    +S   LPSS+++PF
Sbjct: 198 RKSFSRPVSK--LPSSIIYPF 216


>At4g25990.2 68417.m03742 expressed protein
          Length = 409

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 378 SNTSLPSSVVFPFTGDPFTVSNTLPTLIPSL*PNETTIFLFS*CNLMSSGYPNVFS 211
           +NT  PSS +      PF++S   P   P   PN+T         L+S+ YP +FS
Sbjct: 19  NNTPSPSSTISETNSPPFSISTRRPR-TPRKRPNQT---YDEAAALLSTAYPKIFS 70


>At4g25990.1 68417.m03741 expressed protein
          Length = 394

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 378 SNTSLPSSVVFPFTGDPFTVSNTLPTLIPSL*PNETTIFLFS*CNLMSSGYPNVFS 211
           +NT  PSS +      PF++S   P   P   PN+T         L+S+ YP +FS
Sbjct: 19  NNTPSPSSTISETNSPPFSISTRRPR-TPRKRPNQT---YDEAAALLSTAYPKIFS 70


>At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 554

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 742 QRVQRRIEQLASYRHLERVERALEGVVRV-QLIDPLQDYLCTLHVRIRHYY 593
           QR +R IE+  S   + R  +++ G + V +L+D   D + TLH +I H +
Sbjct: 503 QRRKRIIERYNSMDEILRECQSMAGQLDVWKLLDDAHDLVVTLHTKIEHSF 553


>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
           similarity to early-responsive to dehydration stress
           ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 724

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
 Frame = -3

Query: 754 DELEQRVQRRIEQLASYR-HLERVERALEGVV---RVQLIDPLQDYLCTLHVRIRHYY 593
           D L  R++ R +Q AS    ++R+ R    VV   +V++++PL++ L +LH  IR  Y
Sbjct: 650 DHLFSRLKNRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEPLEEILRSLHWEIRMTY 707


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,782,880
Number of Sequences: 28952
Number of extensions: 506473
Number of successful extensions: 922
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4163871744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)