Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C01_e483_05.seq
         (1486 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       24   3.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.4  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 358 VHQTAIIRNNPRKAVRS 408
           +HQT I  NNPR   R+
Sbjct: 46  IHQTVIYHNNPRDPNRA 62


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 639  PLIGWRSTAPDTTSAWGSFTTTSPTLT 559
            P   W ST   TTS W + TTT  T T
Sbjct: 1039 PSTWWSST---TTSPWWTTTTTRRTTT 1062



 Score = 22.6 bits (46), Expect = 7.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 612  PDTTSAWGSFTTTSPT 565
            P TT+ W + TTTS T
Sbjct: 1177 PSTTNHWQTKTTTSTT 1192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,648
Number of Sequences: 336
Number of extensions: 3089
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 44452450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)