Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C01_e483_05.seq
         (1486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   6.6  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   8.8  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 597 AWGSFTTTSPTLTWVVLTMVAAAFVS 520
           +W SF+ +SP + W+  T +++A +S
Sbjct: 195 SWLSFSKSSPVVLWLTFTRISSAGLS 220


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 536 ATIVNTTHVKVGDVVVKEPHAEVVSGAVDLHPIKGVHKGMRVRNRAHHHR 685
           A+ V     +V D   +  H+E+     D +  KGVH  MR  + A  HR
Sbjct: 376 ASSVQGNEDEVPDTASETEHSEIEDFHFDPYSEKGVHIAMRYFDAALTHR 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,970
Number of Sequences: 5004
Number of extensions: 49149
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 828548732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)