Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C01_e483_05.seq
         (1486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0158 - 1103461-1104186                                           73   8e-13
08_01_0202 - 1638978-1639571                                           72   1e-12
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380...    33   0.44 
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415...    30   5.4  
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    30   5.4  
10_08_0081 + 14710478-14710822                                         29   7.1  

>02_01_0158 - 1103461-1104186
          Length = 241

 Score = 72.5 bits (170), Expect = 8e-13
 Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
 Frame = +1

Query: 268 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 447
           A +  GTVKWFN   G+GFI+ +D  ED+FVHQ++I         RS+ +GE VEFA+  
Sbjct: 4   AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEQVEFAISE 59

Query: 448 GEKG-YEAARVTGPGGESVKG 507
            E G  +A  VTGP G  VKG
Sbjct: 60  SEDGRTKAVDVTGPDGSFVKG 80


>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
 Frame = +1

Query: 268 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 447
           +E+V GTVKWF+   G+GFI  +D  ED+FVHQ+++         RS+ DG+ VEF+V +
Sbjct: 3   SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVGS 58

Query: 448 GEKG-YEAARVTGPGGESVKG 507
           G  G  +A  VT PGG ++ G
Sbjct: 59  GNDGRTKAVDVTAPGGGALTG 79


>04_03_0655 +
           18436363-18436901,18436984-18437772,18437952-18438028,
           18438034-18438248
          Length = 539

 Score = 33.5 bits (73), Expect = 0.44
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +2

Query: 389 LARLCVR*ATERRWSLPWLPGRKAMKQPELLVPAVNPS-RVHLMQLTNAAATIVNTTHVK 565
           +A L VR     RW LPW    +      LLV  V P+  V   +L   AA  + + HV 
Sbjct: 334 MASLVVRFTGPERWILPWRVSTRLRSLRRLLVADVPPTWDVSWPRLLLQAAPSLESLHVH 393

Query: 566 VGDVVVKEPHAEVVSGAVDLHP 631
           V      +P A    G   + P
Sbjct: 394 VAATADDQPAAAAAPGREIMWP 415


>06_01_0581 -
           4153668-4153883,4154070-4155104,4155718-4156292,
           4158457-4158826,4159925-4160590,4161008-4161223,
           4161725-4161793
          Length = 1048

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
 Frame = +2

Query: 425 RWSLPWLPGRKAMKQPEL---LVPAVNPSRVHLMQLTNAAATIVNTTHVKVGDVVVKEPH 595
           R +L  + G   + +PE    +V  +N   +   +L +   +I++TT V+ G V ++E  
Sbjct: 404 RSALAAVAGLVEVSRPEANPNIVDNLNQMELCTNKLLDILNSILDTTKVESGKVQLEEVE 463

Query: 596 ---AEVVSGAVDLHPIKGVHKGMRV 661
              A+V+  +VD+  + G+ KG+ V
Sbjct: 464 FNMADVLEESVDMANVVGITKGIEV 488


>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
            7535889-7535932,7536042-7536146,7536223-7536344,
            7536807-7536894,7536966-7537052,7537718-7537786,
            7537859-7538188,7539777-7539824,7540003-7540069,
            7540150-7540208,7541220-7541453,7541536-7541601,
            7541684-7541883,7542104-7542197,7542295-7542414,
            7542596-7542703,7542808-7542871,7543378-7543409,
            7546049-7548007
          Length = 1407

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 388  GCFGLSQFDVQTHLLWCHS 332
            GC+GL QF ++  LL CHS
Sbjct: 1107 GCYGLPQFRMRVFLLGCHS 1125


>10_08_0081 + 14710478-14710822
          Length = 114

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 627 WRSTAPDTTSAWGSFTTTSPTLTWV 553
           W S AP TT+AWG+FT       W+
Sbjct: 44  WSSNAP-TTNAWGAFTAPRTVPRWL 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,600,620
Number of Sequences: 37544
Number of extensions: 415296
Number of successful extensions: 1357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4745262172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)