Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_C01_e483_05.seq
         (1486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   54   4e-07
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.005
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)                   33   0.44 
SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)                       29   7.2  
SB_9399| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.2  
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.5  

>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 53.6 bits (123), Expect = 4e-07
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = +1

Query: 265 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 444
           ++ + +GTVKWFN + GYGFI    + +D+FVH  AI         +S+ +G+AV F   
Sbjct: 12  MSNRQNGTVKWFNDEKGYGFIT-PQSGDDLFVHFKAI----QSDGFKSLKEGQAVTFVAT 66

Query: 445 AGEKGYEAARV 477
            G+KG +A  V
Sbjct: 67  RGQKGMQAEEV 77


>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 39.9 bits (89), Expect = 0.005
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +1

Query: 454 KGYEAARVTGPGGESVKGSPYAADKRR 534
           +G EA+ VTGP GE V+GS YA D+RR
Sbjct: 13  QGLEASNVTGPDGEPVQGSKYAPDRRR 39


>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1671

 Score = 33.5 bits (73), Expect = 0.44
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 681 WWCALF--LTLIPLCTPLIGWRSTAPDTTSAWG-SFTTTSPTLTWVVLTMV 538
           W+C  F  L ++  C+P++GW        SA+G S      T++W  L +V
Sbjct: 74  WFCTFFGALAMLDECSPVLGWVPVCCFVVSAFGISLFAQHETVSWKTLRLV 124


>SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 1142

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 551 TTHVKVGDVVVKEPHAEVVSGAVDLHPIKGVHKGMRVRNRA 673
           +T++ V D ++ EP A  V     +H I+G+   ++VRN A
Sbjct: 235 STYLLVVDSILSEPLARTVIVFAQVHQIRGLLHAVQVRNAA 275


>SB_9399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 763 LLLDSSVPDRLRDVRRGSYDGNYNCAAVVVRSVPDPHPLVHPLDW 629
           L+++  +   LR +    Y G  +    V+R + + HP   PL W
Sbjct: 91  LVMEEQINSALRYLTESDYGGVLSLTDDVMRQLQEKHPNAQPLSW 135


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 268 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 441
           AEK  G V   ++K  +GFI R D   ++F H +  + +     +  +  G+ VEF +
Sbjct: 201 AEKYQGVVS--SMKESFGFIERADKVSEIFFHYSEFLDD-----INELTLGDDVEFII 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,179,018
Number of Sequences: 59808
Number of extensions: 430310
Number of successful extensions: 1123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4800750793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)