Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_C01_e483_05.seq
(1486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 133 4e-31
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 88 1e-17
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 85 9e-17
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 85 9e-17
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 85 1e-16
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 56 5e-08
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 56 5e-08
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 56 5e-08
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 56 5e-08
AF016445-11|AAC69054.1| 248|Caenorhabditis elegans Pharyngeal g... 31 2.1
AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical ... 31 2.1
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 31 2.8
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 31 2.8
AF016418-6|AAK18899.1| 248|Caenorhabditis elegans Hypothetical ... 30 3.7
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 6.4
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 133 bits (321), Expect = 4e-31
Identities = 62/89 (69%), Positives = 69/89 (77%)
Frame = +1
Query: 262 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 441
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAII NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 442 VAGEKGYEAARVTGPGGESVKGSPYAADK 528
V G KG EAA VTGP G V+GS YAAD+
Sbjct: 76 VEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 88.2 bits (209), Expect = 1e-17
Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +1
Query: 265 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFAV 441
I + G VKW++V YGFI+RND ++D+FVHQTAI ++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 442 VAGEKGYEAARVTGPGGESVKGSPY 516
V G+ G EAA VTGP G++V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 85.4 bits (202), Expect = 9e-17
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = +1
Query: 262 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 429
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 430 EFAVVAGEKGYEAARVTGPGGESVKGSPYA 519
F +V G KG EAA VTGP GE+V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 85.4 bits (202), Expect = 9e-17
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = +1
Query: 262 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 429
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 430 EFAVVAGEKGYEAARVTGPGGESVKGSPYA 519
F +V G KG EAA VTGP GE+V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 85.0 bits (201), Expect = 1e-16
Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFA 438
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI +++ K +R++ D E V F
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118
Query: 439 VVAGEKGYEAARVTGPGGESVKGSPY 516
+V G+ G EAA VTGP G +V GS Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 56.4 bits (130), Expect = 5e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 283 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 456
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 457 GYEAARVTGP-GGESVKGS 510
G EA V+G G+ +KGS
Sbjct: 80 GREAYAVSGEVEGQGLKGS 98
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 56.4 bits (130), Expect = 5e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 283 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 456
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 457 GYEAARVTGP-GGESVKGS 510
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 56.4 bits (130), Expect = 5e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 283 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 456
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 457 GYEAARVTGP-GGESVKGS 510
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 56.4 bits (130), Expect = 5e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 283 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 456
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 457 GYEAARVTGP-GGESVKGS 510
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>AF016445-11|AAC69054.1| 248|Caenorhabditis elegans Pharyngeal
gland toxin-relatedprotein 4 protein.
Length = 248
Score = 31.1 bits (67), Expect = 2.1
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = -2
Query: 657 LIPLCTPLIGWRSTAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCIR*TLDGFTAGTS 478
L P IG+ + D + +TT +PT VV M AA +C + GF T
Sbjct: 52 LYPPADAAIGYPAAGNDAERPFACYTTATPTPAPVVADMKTAALANCAK--TCGFCCSTD 109
Query: 477 NSGC 466
C
Sbjct: 110 AYNC 113
>AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.3 protein.
Length = 248
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -2
Query: 657 LIPLCTPLIGWRSTAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCIR*TLDGFTAGTS 478
L P P G+ + D + +TT +PT VV M +AA +C R G TS
Sbjct: 55 LYPASDPATGYPAPGNDVERPFACYTTATPTPAPVVPDMRSAALKNCAR--TCGLCCKTS 112
Query: 477 NSGC 466
+ C
Sbjct: 113 DFDC 116
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 830 RMARREKYKRRQPLQHQTNNSSQSRXKQASXPP 928
R RE+Y+ R+ + +T + S+SR ++A+ PP
Sbjct: 1546 RSRSRERYRSRRDRRSRTKSRSRSRSREAAPPP 1578
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 830 RMARREKYKRRQPLQHQTNNSSQSRXKQASXPP 928
R RE+Y+ R+ + +T + S+SR ++A+ PP
Sbjct: 171 RSRSRERYRSRRDRRSRTKSRSRSRSREAAPPP 203
>AF016418-6|AAK18899.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.4 protein.
Length = 248
Score = 30.3 bits (65), Expect = 3.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 657 LIPLCTPLIGWRSTAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCIR 511
L P P G+ + D + +TT +PT VV M +AA +C R
Sbjct: 55 LYPASDPATGYPAPGNDVERPFACYTTATPTPAPVVPDMRSAALKNCAR 103
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.5 bits (63), Expect = 6.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 768 LPSSASTQLPAGPGRRXTEPSEWPGGRSTRG 860
+ S STQ+P G T+PS G ST G
Sbjct: 1149 MTSQGSTQIPGSTGSTVTQPSTGSGSTSTSG 1179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,040,322
Number of Sequences: 27780
Number of extensions: 305152
Number of successful extensions: 997
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4266737980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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