Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B12_e570_04.seq
         (1556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical ...    31   2.2  
Z81050-3|CAB02849.1|  291|Caenorhabditis elegans Hypothetical pr...    30   5.1  
Z70205-4|CAA94115.2|  528|Caenorhabditis elegans Hypothetical pr...    30   5.1  
Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    29   8.9  

>AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical
            protein Y2H9A.3 protein.
          Length = 291

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 27/107 (25%), Positives = 29/107 (27%)
 Frame = +3

Query: 1176 GXPXGAGPXGXPPXXGSGKXPXPXXXXXXXXSXXXXFXCXXXVXPGFPXWAXGPXAXXXP 1355
            G P  AGP G P   G G  P P                     PG P    G  +   P
Sbjct: 145  GAPGPAGPDGQPGQDGQGGQPGPAGPAGPAGDAGAPGAPGQDGQPGAPG-QDGHRSTGTP 203

Query: 1356 XXTXGPXXXGPSLXGGXXNXXPKLAXXPSXGXXXGRXRPXNXPXLXG 1496
                 P   GP+   G     P  A  P      G   P   P   G
Sbjct: 204  GAAGAPGPAGPAGQDG----QPGSAGGPGEAGAPGAPGPDGQPGQPG 246


>Z81050-3|CAB02849.1|  291|Caenorhabditis elegans Hypothetical protein
            C50B6.4 protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 19/72 (26%), Positives = 21/72 (29%)
 Frame = +3

Query: 1176 GXPXGAGPXGXPPXXGSGKXPXPXXXXXXXXSXXXXFXCXXXVXPGFPXWAXGPXAXXXP 1355
            G P  AGP G P   G G  P P                     PG P    G  +   P
Sbjct: 145  GAPGPAGPDGQPGQDGQGGQPGPAGPAGPAGDAGAPGAPGQDGQPGAPG-QDGQRSTGTP 203

Query: 1356 XXTXGPXXXGPS 1391
                 P   GP+
Sbjct: 204  GAAGAPGPAGPA 215


>Z70205-4|CAA94115.2|  528|Caenorhabditis elegans Hypothetical
           protein C11H1.5 protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 645 TYHTKVHVMSSRKLKKXNRH 704
           +YHT++H ++SRK++  N H
Sbjct: 237 SYHTRLHALNSRKIRPSNDH 256


>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical protein
            H06A10.2 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 21/77 (27%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
 Frame = -2

Query: 1402 PPXXXGPXX-XGPCVXXGXXXAXGPXAQXGXPGXTXXXXKKXXXXXXXXXXXXXGXGXFP 1226
            PP   GP    GP    G   A  P    G PG                     G   +P
Sbjct: 162  PPGPDGPAGPAGPDGEAGSPAAPSPPGPPGPPGPAGPAGNDGAAGTPGPDGPA-GESTYP 220

Query: 1225 EPXXGGXPXGPAPXGXP 1175
            EP   G    P P G P
Sbjct: 221  EPAGPGPAGPPGPAGPP 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,908,294
Number of Sequences: 27780
Number of extensions: 428224
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4494062834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)