Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B11_e562_03.seq
         (1547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    27   0.37 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    27   0.37 
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   6.1  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 27.1 bits (57), Expect = 0.37
 Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
 Frame = -3

Query: 672 QYNMKT--SNIYSN*N**YMIKYINLSTLSADSPGELDVFRHNGYAFGVDGAKVGVFKQT 499
           QYN        Y N N      YIN         GE   + H GY +  DG +V     T
Sbjct: 349 QYNYPNPQQQYYYNKNHPNSENYINHQNYVQGYQGEHPNYNHYGYHYSGDGGEVAHLPNT 408

Query: 498 H 496
           H
Sbjct: 409 H 409


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 0.37
 Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
 Frame = -3

Query: 672 QYNMKT--SNIYSN*N**YMIKYINLSTLSADSPGELDVFRHNGYAFGVDGAKVGVFKQT 499
           QYN        Y N N      YIN         GE   + H GY +  DG +V     T
Sbjct: 297 QYNYPNPQQQYYYNKNHPNSENYINHQNYVQGYQGEHPNYNHYGYHYSGDGGEVAHLPNT 356

Query: 498 H 496
           H
Sbjct: 357 H 357


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 280 APSTGGVKKPHRYRPGTVALREI 348
           AP+T G+  P    PG +   EI
Sbjct: 265 APATTGIAGPFTQSPGVLGFNEI 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,672
Number of Sequences: 336
Number of extensions: 4672
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46603375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)