Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B10_e554_04.seq
         (1513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    29   1.7  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    28   3.9  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    28   3.9  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   5.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   8.9  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   8.9  

>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 663 LYVTWDIFYIWFFPFKYIW*RRSLYVTWDIIHIWLLCFPFKYFW*RRSHKITIFLFDFYL 484
           L   W IFY+   P+         +  ++I  ++    P K +W ++S  I + LF  ++
Sbjct: 181 LVEVWSIFYLEILPYIEATFLPVTFAKFEIAQLFEE--PMKTYWLKKSANIDLKLFSIWV 238

Query: 483 FVCFCF--RISSTTTFIK 436
           F  F    ++  T  FI+
Sbjct: 239 FRKFVVMPKLKKTNRFIE 256


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 522 SHKITIFLFDFYLFVCFCFRISSTTTFIK*RCEEIKHISVHVFFLFFSI 376
           S + T FL   YL V  C   S T T +    + ++HIS+H  F+   I
Sbjct: 329 SSQATTFLL--YLLVILCVGASVTRTGLLLDMDVMEHISLHPLFIISGI 375


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -2

Query: 585 TWDIIHIWLLCFPFKYFW*RRSHKITIFLFDFYLFVCFCFRISSTTTFIK*RCEEIKHIS 406
           TWDI+  W L       W  R H+I   L+ + + +   F + S+  F       I+H S
Sbjct: 541 TWDILMDWNLLVRKDGRWQFREHRILKQLWPYIIAMILNFIVRSSFIFYCIFPNHIQHSS 600

Query: 405 VHVFFL 388
              FF+
Sbjct: 601 GISFFV 606


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 499 QEDCNFMRSPSPEVLKRKTQQPNMDDIPCNIKRSPLPDVL 618
           Q+D  F+  P+     R+ ++P    IPC+ K S    VL
Sbjct: 330 QQDTRFVNDPNSTSHDRRQKRPTRRHIPCSNKSSGSSTVL 369


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 19/87 (21%), Positives = 42/87 (48%)
 Frame = +1

Query: 439 DKRSCRGNSKTEAHKEVKIKQEDCNFMRSPSPEVLKRKTQQPNMDDIPCNIKRSPLPDVL 618
           D R  +G+ + E   + K  +    + RSPSP+   R  Q  + D  P   + + +   L
Sbjct: 239 DMRFDQGHFQDERDLK-KYVRTSRQYSRSPSPDFRTRNHQFHSRDSQPITQRHTDIESRL 297

Query: 619 KRKKPNIEDIPCNVKRSPSPDILKRKK 699
           ++ + N +++  +  R    ++L++K+
Sbjct: 298 QKMQDNAKEL--DESRRKKIELLEKKE 322


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 469 TEAHKEVKIKQEDCNFMRSPSPEVLKRKTQQPNMDDIPCNIKRSPL 606
           +E H+E ++  E   + R  SPE  +R++Q P  +    + +RSPL
Sbjct: 2   SEVHQESEV--EYSRWKRERSPERSQRRSQSPPGEQSAYHRERSPL 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,820,037
Number of Sequences: 5004
Number of extensions: 89092
Number of successful extensions: 245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 846388298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)