Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B10_e554_04.seq
         (1513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0091 + 13312904-13313647                                         32   1.4  
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848...    31   2.4  
03_02_0536 - 9284079-9286034                                           31   3.1  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    30   4.2  
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281...    29   7.3  

>07_03_0091 + 13312904-13313647
          Length = 247

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 526 PSPEVLKRKTQQPNMDDIPC-NIKRSPLPDVLKRKKPNIEDIPCNVKRSPSPDILKRKKP 702
           PSP+   +   QP+    P  + K +P P+  +  +PN +  P   K+SP PD     +P
Sbjct: 58  PSPQPNPQPNPQPDPKPSPQPDPKPTPQPEPKQDPQPNPQPDP---KQSPQPDPKPTPQP 114

Query: 703 NNRR*PQ 723
           N ++ PQ
Sbjct: 115 NPKQDPQ 121


>02_04_0179 +
           20682852-20684510,20684593-20684661,20684741-20684809,
           20686779-20688206
          Length = 1074

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 547 RKTQQPNMDDIPCNIKRSPLPDVLKRKKPNIEDIPCNVKRSPSPDILKRKKPN 705
           R+ ++PN    P  I  S L     +KKPN    P  +  S      K+KKPN
Sbjct: 529 RQQKEPNPTGTPSKIAVSKLEGETTQKKPNPTGTPSEMAVSRLEGETKQKKPN 581


>03_02_0536 - 9284079-9286034
          Length = 651

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 520 RSPSPEVLKRKTQQPNMDDIPCNIKRSPLPDVLKRKKPNIEDIPCNVKRSPSP 678
           R P PE +K +  +P+M++    IK  P P+  K  +P  E +   VK  P P
Sbjct: 366 REPEPEPVKEEEPEPDMNE----IKALPAPEDYKEPEP--EKVEEEVKPEPPP 412


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
 Frame = +1

Query: 442 KRSCRGNSKTEAHKEVKIKQEDCNFMRSPSPEVLKRKTQQPNMDDIPCNIKRSPLPDVLK 621
           KR+   N KTE      +  E CN  + P+P   K + Q        CN+ + P P V  
Sbjct: 262 KRNEDENGKTEE----TLVAEQCNLTKDPNPMSGKERDQVAEQ----CNLTKDPKP-VSG 312

Query: 622 RKKPNIEDIPC---------NVKRSPSPDILKRKKPNNRR*PQSDI 732
           +K   I + PC           KR     ++K+++ + +R  Q+D+
Sbjct: 313 QKCEQICNEPCEEVVLKRSSKSKRKTDKKLMKKQQHSKKRTAQADV 358


>03_01_0360 +
           2815067-2816033,2816120-2816198,2816275-2816342,
           2817382-2817464,2821566-2823083
          Length = 904

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 511 NFMRSPSPEVLKRKTQQPNMDDIPCNIKRSPLPDVLKRKKPNIEDIPCNVK 663
           +F+RSP  E L+ +T+   ++D+    K +      KRKK  +E   C+++
Sbjct: 750 SFVRSPC-ESLRPRTRPAIVEDMTNETKTAEASTANKRKKAKVEAFQCDIE 799


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,359,815
Number of Sequences: 37544
Number of extensions: 623290
Number of successful extensions: 1370
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4849681144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)