Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_B10_e554_04.seq
(1513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.002
SB_43730| Best HMM Match : Drf_FH1 (HMM E-Value=0.74) 35 0.15
SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0) 34 0.26
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 31 3.2
SB_36653| Best HMM Match : ACBP (HMM E-Value=3.6) 30 4.2
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 30 4.2
SB_26636| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.2
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 29 7.4
SB_25596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 29 7.4
SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.7
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.7
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 29 9.7
SB_339| Best HMM Match : Sterile (HMM E-Value=4.7) 29 9.7
>SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 142 ETENLIISVEKHPCLWDVNNKDFHNRDIRDLAWEQVCNEV 261
E E LI E+ PCLWDV+NK+++ + R A E++ ++
Sbjct: 36 EVEQLIDLFEERPCLWDVSNKEYYQKGNRQRAEEEIAEQM 75
>SB_43730| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
Length = 303
Score = 35.1 bits (77), Expect = 0.15
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 559 QPNMDDIPCNIKRSPLPDV-LKRKKPNIEDIPCNVKRSPSPDI 684
+P+ DIPC + PD+ KP DIPC P PDI
Sbjct: 157 KPHKPDIPCTPDKPYKPDIPCTPDKPYKPDIPCTPDEPPKPDI 199
Score = 34.7 bits (76), Expect = 0.20
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 559 QPNMDDIPCNIKRSPLPDV-LKRKKPNIEDIPCNVKRSPSPDI 684
+P+ D PC + P PD+ KP+ DIPC + PDI
Sbjct: 109 KPHKPDKPCTPDKPPKPDIPCTPDKPHKPDIPCTPDKPHKPDI 151
Score = 33.9 bits (74), Expect = 0.34
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 559 QPNMDDIPCNIKRSPLPDV-LKRKKPNIEDIPCNVKRSPSPDI 684
+P+ DIPC PD+ KP+ D PC + P PDI
Sbjct: 85 EPHKPDIPCTPDEPYKPDIPCTPDKPHKPDKPCTPDKPPKPDI 127
Score = 33.1 bits (72), Expect = 0.60
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 559 QPNMDDIPCNIKRSPLPDV-LKRKKPNIEDIPCNVKRSPSPDI 684
+P DIPC + PD+ +P DIPC + P PDI
Sbjct: 169 KPYKPDIPCTPDKPYKPDIPCTPDEPPKPDIPCTQDKPPKPDI 211
Score = 32.7 bits (71), Expect = 0.79
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 559 QPNMDDIPCNIKRSPLPDV-LKRKKPNIEDIPCNVKRSPSPDI 684
+P DIPC + PD+ KP+ DIPC + PDI
Sbjct: 121 KPPKPDIPCTPDKPHKPDIPCTPDKPHKPDIPCTPDKPHKPDI 163
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 559 QPNMDDIPCNIKRSPLPD-VLKRKKPNIEDIPCNVKRSPSPDI 684
+P+ DIPC + PD + KP+ DIPC + P I
Sbjct: 229 EPSKPDIPCTPDKPYKPDRPCTQDKPHKPDIPCTPDKPDKPGI 271
>SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 968
Score = 34.3 bits (75), Expect = 0.26
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 142 ETENLIISVEKHPCLWDVNNKDFHNR 219
E E LI+S E CLW + NK++ NR
Sbjct: 829 EIERLIVSYESRKCLWGIFNKEYTNR 854
>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 32.3 bits (70), Expect = 1.0
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = +1
Query: 412 MLNFLAPLFDKRSCRGNSKTEAHKEVKIKQEDCNFMRSPSPEV---LKRKTQQPNMDDIP 582
++N +P + R + K + KE+K K+E+C+ + +PE+ L + + + P
Sbjct: 760 VVNSASPRKNTRKTKSLRKKASLKELKSKKENCDIVSKLTPEMRNDLSSASVESELQSSP 819
Query: 583 CNIKRSPLPDVLKRKKPNIEDIPCNVKRSPSP-DILKRKKPNNRR 714
I+ + + + +I P + SPSP +L R + R+
Sbjct: 820 TMIRTT--AEATQESLTSIPTSPSSPILSPSPHSVLSRVRSGERK 862
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 1386 PQGTLGPSPXVXGXXPGPXGPXXKXXXPPPXP 1481
P G L P P G P P P PPP P
Sbjct: 183 PPGVLAPPPAPPGVLPPPPAPPGALIPPPPAP 214
>SB_36653| Best HMM Match : ACBP (HMM E-Value=3.6)
Length = 206
Score = 30.3 bits (65), Expect = 4.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 148 ENLIISVEKHPCLWDVNNKDFHNRDIRDLAWEQVCNE 258
E L +V P L+D + KDF +++ ++ AW+QV +
Sbjct: 19 EALAEAVRAFPVLYDKSIKDFKDKNKKENAWKQVAEQ 55
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 30.3 bits (65), Expect = 4.2
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = +1
Query: 427 APLFDKRSCR--GNSKTEAHKEVKIKQEDCNFMRSPSPEVLKRKTQQPNMDDIPCNIKRS 600
+P DKR R S++ +H++ + + E + RSP R+++ P P +RS
Sbjct: 204 SPSTDKRKSRSRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSP---QRS 260
Query: 601 PLPDVLKR-KKPNIEDIPCNVKRSPSPDILKRKKPNNRR 714
P KR + + RS SP + + P RR
Sbjct: 261 RSPRSSKRYRSSRSHRKHRSHSRSRSPRSKRSRSPRKRR 299
>SB_26636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 30.3 bits (65), Expect = 4.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 148 ENLIISVEKHPCLWDVNNKDFHNRDIRDLAWEQVCNE---VVHDWETCRDKVNKC 303
E L +V P L+D + KDF ++ ++ AW+QV + V+ TC + C
Sbjct: 19 EALAEAVRAFPVLYDKSIKDFKEKNKKENAWKQVAEQAGFVIPRRRTCTNVPVNC 73
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 29.5 bits (63), Expect = 7.4
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 439 DKRSCRGNSKTEAHKEVKIKQEDCNFMRSPSPEVLKRKTQQPNMDDIP 582
DK S RG+S+ E ED R SP +LKR + +P + P
Sbjct: 727 DKNSNRGSSENVLRVEENWFSEDSKKKRRNSPSLLKRLSPKPRKNVSP 774
>SB_25596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 29.5 bits (63), Expect = 7.4
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 148 ENLIISVEKHPCLWDVNNKDFHNRDIRDLAWEQVCNE 258
E + +V P L+D + KDF +++ ++ AW+QV +
Sbjct: 19 EAIAEAVRAFPVLYDKSIKDFKDKNKKENAWKQVAEQ 55
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 29.5 bits (63), Expect = 7.4
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = +2
Query: 455 EEIRKQKHTKR*KSNKKIVILCDLRHQKYLNGKHNNQIWMISHVT*SDLRYQMYLNGKNQ 634
EE KQK +R K K+ ++ D H+K + + + + + Q+ K+
Sbjct: 962 EEKEKQKEAERAKKEKERLLQEDKLHEKEEKDRKDKEKRKVEKEK-REKDKQVEKEKKDS 1020
Query: 635 I*KISHVT*SDLRHQIYLNEKNQIT--EDDPNQISNVSLQRDEIN 763
+ ++ SD ++ E+ Q E +PN+++ V L +E N
Sbjct: 1021 LKRVKKRKDSDKERKVKEKEEEQKVKIEKEPNKVTEVQLMVEETN 1065
>SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 29.1 bits (62), Expect = 9.7
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 523 SPSPEVLKRKTQQPNMDDIPCNIKRSPLPDVLKRKKPNIEDIPCNVKRSPSPDILKRKKP 702
+PS + + T++ + +P +++ PDVL R P + + N++ + D L KKP
Sbjct: 679 TPSGKSEETSTRESSNPPLPYKPRKASAPDVLSR-VPGMSSLVSNLRATLVADGLDLKKP 737
Query: 703 NNRR 714
R
Sbjct: 738 QPAR 741
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 29.1 bits (62), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 467 FEFPRQLRLSNNGARKLSILAYTYFFCFLALPFLN 363
F F QL + G + L++ Y FFC +P LN
Sbjct: 1436 FHFSDQLSIDKMGNKPLNMYQYKLFFCGCRVPQLN 1470
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 29.1 bits (62), Expect = 9.7
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 220 DIRDLAWEQVCNEVVHDWETCRDKVNKCAVLRKRWT-HIRDYYRKDL 357
DIR+L EQ+C+ + + E C + ++ T H+RD+ + DL
Sbjct: 406 DIRELPTEQICSNIENIVEECIKLWPQSKIVVSGLTFHLRDHAKNDL 452
>SB_339| Best HMM Match : Sterile (HMM E-Value=4.7)
Length = 206
Score = 29.1 bits (62), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 467 FEFPRQLRLSNNGARKLSILAYTYFFCFLALPFLN 363
F F QL + G + L++ Y FFC +P LN
Sbjct: 92 FHFSDQLSIDKMGNKPLNMYQYKLFFCGCRVPQLN 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,886,117
Number of Sequences: 59808
Number of extensions: 693664
Number of successful extensions: 1639
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4906390786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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