Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B10_e554_04.seq
         (1513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52080.1 68414.m05875 actin binding protein family contains P...    31   1.5  
At1g76740.1 68414.m08931 expressed protein weak similarity to fi...    31   2.6  
At4g18640.1 68417.m02759 leucine-rich repeat transmembrane prote...    30   3.5  
At4g28100.1 68417.m04031 expressed protein                             30   4.6  
At4g39756.1 68417.m05630 kelch repeat-containing F-box family pr...    29   6.1  
At4g32820.1 68417.m04668 expressed protein ; expression supporte...    29   8.0  

>At1g52080.1 68414.m05875 actin binding protein family contains
           Prosite PS00019: Actinin-type actin-binding domain
           signature 1; similar to actin binding protein
           (GI:28071265) [Arabidopsis thaliana]; similar to A-type
           inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
           virus]
          Length = 573

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +1

Query: 460 NSKTEAHKEVKIKQEDCNFMRSPSPEVLKRKTQQ 561
           NSK E  +E++  +EDCN +RS + E LK+  +Q
Sbjct: 312 NSKLEEPEEIETLREDCNRLRSENEE-LKKDVEQ 344


>At1g76740.1 68414.m08931 expressed protein weak similarity to
           fimbriae-associated protein Fap1 (GI:3929312)
           [Streptococcus parasanguinis]; weak similarity to 1MDa_1
           protein (GI:24620455) [Caenorhabditis elegans]
          Length = 1532

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +1

Query: 463 SKTEAHKEVKIKQEDCNFMRSPSPEVLKRKTQQPNMDD-IPCNIKR-SPLPDVLKRKKP 633
           S  E  +E+KIKQ   + + S   E+++RK ++P +D  +P   KR +   +VL  K+P
Sbjct: 262 SAKETKEEIKIKQSKRSTVVSSQKELVERKAKEPLVDSKVPRRSKRLANDVNVLLDKRP 320


>At4g18640.1 68417.m02759 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 686

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +1

Query: 466 KTEAHKEVKIKQEDCNFMRSPSPEVLKRKTQQPNM--DDIPCNIKRSP-LPDVLKRKKPN 636
           +T+ +K  ++ +E  N    P+P      +  P +  +  P +    P + +  KR+ P 
Sbjct: 231 ETDIYKRRELLEETSNLAAEPAPSA---PSPSPGIITEASPRSSGSFPAVTNAKKRRPPL 287

Query: 637 IEDIPCNVKRSPSPDILKRKKPNNRR 714
           +  +P   K S SPDI K +  +N++
Sbjct: 288 VPPVPSPDKGSTSPDISKNQPQDNKQ 313


>At4g28100.1 68417.m04031 expressed protein
          Length = 304

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = +1

Query: 457 GNSKTEAHKEVKIKQEDCNFMRSPSPEVLKRKTQQPNMDDIPCNIKRSPLPDVLKRKKPN 636
           GN KT   +  K+  +DC  M         +    P +  +   I  SP P  L +  P+
Sbjct: 204 GNKKTTTERGTKMMSKDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSPHPPHLNKCSPD 263

Query: 637 IEDIPCNV 660
            E++P  V
Sbjct: 264 QENMPLAV 271


>At4g39756.1 68417.m05630 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 374

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 106 IISTYSIVSGMCETENLIISVEKHPCLW-DVNNKDFHNRDIRDLA 237
           ++++  ++   CE EN++    +  C W D  +K++  RDI+ LA
Sbjct: 253 VVASSFMIERKCEIENVLYRFSRQSCSWYDTKHKEW--RDIKGLA 295


>At4g32820.1 68417.m04668 expressed protein ; expression supported
           by MPSS
          Length = 1817

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +1

Query: 493 IKQEDCNFMRSPSPEVLKRKTQQPNMDDIPCNIKRSPLPDVLKRKKPNIEDIPCNVKRSP 672
           +  +DCN  R     V   K ++P   +     +RS   + L+ +KP  E +  +  + P
Sbjct: 307 VSVKDCNIERESGGSV---KEKEPVFSEEHPQERRSTRLERLRNQKPEKEGLEFDNSKDP 363

Query: 673 SPDILK 690
           S DIL+
Sbjct: 364 SSDILQ 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,978,728
Number of Sequences: 28952
Number of extensions: 490474
Number of successful extensions: 1391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)