Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B09_e546_03.seq
         (1524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    38   0.004
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   3.9  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    28   3.9  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   5.2  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   9.0  

>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 372 AEIHEGIWGGEAVVKGFQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRL 551
           ++  + ++GG     G  K      +    W+P      + S VL     + VT R +R 
Sbjct: 25  SKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRT 84

Query: 552 INDHYGFDHYLLK-TPSMPFSIHAR 623
           I+   G D YL+K TPS   S+  R
Sbjct: 85  IDKEGGLDEYLVKSTPSRLKSLGLR 109


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 474 VWVPNNVVLYGVSDHV 427
           VWV NNV+LY   DH+
Sbjct: 541 VWVENNVLLYATLDHL 556


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 461 IMW-YSTASRITFLETFYYCFTTPYSLMNLSWIF*RDRYVLYR*CF 327
           I+W YST+ R+T L TF   FTT + +   S +  +D+  L+R  F
Sbjct: 174 ILWFYSTSLRVTLL-TFLLSFTTLHFVNKFSLLL-KDQQYLHRQVF 217


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 420 FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIND 560
           F   DP RRR P  +V  L+R +   E     L+   +D    +I D
Sbjct: 46  FYPEDPIRRRAPKEYVEALERQIAFFEAFVKKLAKVGSDEQSLMIQD 92


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 465 VPILKRTVVRSEVLNTHLSVTVTDRTIRLIND 560
           VPILKR + +       L+V +TD   +L+ D
Sbjct: 257 VPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,967,355
Number of Sequences: 5004
Number of extensions: 70427
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 854316994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)