Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_B09_e546_03.seq
(1524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0788 - 21523998-21524412,21525421-21525620 40 0.007
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 29 7.3
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152... 29 7.3
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 29 7.3
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437... 29 7.3
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 29 9.7
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 29 9.7
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 29 9.7
>07_03_0788 - 21523998-21524412,21525421-21525620
Length = 204
Score = 39.5 bits (88), Expect = 0.007
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 387 GIWGGEAVVKGFQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLINDHY 566
GI+ G + G + + + W P ++ + S + + H+ V VT +R I+
Sbjct: 47 GIYAGRHIQFGNKVSEDGGNKSRRTWKPNVQEKRLFSYIHDRHIRVKVTTHALRCIDKAG 106
Query: 567 GFDHYLLKTP 596
G D YLLKTP
Sbjct: 107 GIDEYLLKTP 116
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 29.5 bits (63), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 458 MWYSTASRITFLETFYYCFTTPYSLMNL 375
+WY R+ FLE F Y TT Y L ++
Sbjct: 844 IWYGYGGRLKFLERFAYINTTIYPLTSI 871
>05_05_0339 +
24213179-24213821,24214402-24214623,24215035-24215282,
24215385-24215524,24215579-24215753
Length = 475
Score = 29.5 bits (63), Expect = 7.3
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +3
Query: 324 GETLPIQNIPI-PLKYPAEIHEGIWGGEAVVKGFQKRDPRR--RRVPHYWVPILKRTVVR 494
G L + + P+ PLK + E +W + V+ G + R + YW ++ V+
Sbjct: 129 GFCLNMVDTPLCPLKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVII 188
Query: 495 SEVLNTHLSVTVTDRTI 545
S S+ R I
Sbjct: 189 SLAKGIEASIDPVPRII 205
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 29.5 bits (63), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 458 MWYSTASRITFLETFYYCFTTPYSLMNL 375
+WY R+ FLE F Y TT Y L ++
Sbjct: 830 IWYGYGGRLKFLERFAYINTTIYPLTSI 857
>01_06_0705 +
31342236-31342415,31343086-31343391,31343555-31343796,
31343927-31344122,31344419-31344602,31344984-31345147,
31345454-31345981,31346530-31346630,31347619-31347634,
31347834-31347941,31348028-31348078,31349059-31349100,
31349442-31349541,31350039-31350256,31350367-31350807,
31350916-31351043,31351131-31351992
Length = 1288
Score = 29.5 bits (63), Expect = 7.3
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = +3
Query: 297 GKWKRDELTGETLPIQNIPIPLKYPAEIHEGIWGGEAVVKGFQKRDPRRRRVPHYWVPIL 476
G WK DE ++L I +PL I GE + + +R +PH W P
Sbjct: 191 GSWKNDEAATKSLAIDGYSVPL-----FKVKITSGELFL-----HESVKRAIPHSWDPSA 240
Query: 477 KRTVVRSEVLNTHLSVTVT 533
+ + E TH+ +VT
Sbjct: 241 LASFI--ENYGTHIITSVT 257
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 29.1 bits (62), Expect = 9.7
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 411 VKGFQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLS-VTVTDRTIRLINDHYGFDHYLL 587
++G+ PR R +++P++ T + +L L+ +T + + R N H+ DH ++
Sbjct: 626 LRGYHLTKPRHIRCDGFFLPVIDTTQIGRIILTNLLTMITRSHKGGRSWNGHWDLDHVMV 685
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 29.1 bits (62), Expect = 9.7
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 411 VKGFQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLS-VTVTDRTIRLINDHYGFDHYLL 587
++G+ PR R +++P++ T + +L L+ +T + + R N H+ DH ++
Sbjct: 626 LRGYHLTKPRHIRCDGFFLPVIDTTQIGRIILTNLLTMITRSHKGGRSWNGHWDLDHVMV 685
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 29.1 bits (62), Expect = 9.7
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 411 VKGFQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLS-VTVTDRTIRLINDHYGFDHYLL 587
++G+ PR R +++P++ T + +L L+ +T + + R N H+ DH ++
Sbjct: 626 LRGYHLTKPRHIRCDGFFLPVIDTTQIGRIILTNLLTMITRSHKGGRSWNGHWDLDHVMV 685
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,765,744
Number of Sequences: 37544
Number of extensions: 462745
Number of successful extensions: 846
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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