Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_B09_e546_03.seq
(1524 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97634-6|CAI95596.1| 218|Homo sapiens mitochondrial ribosomal p... 96 3e-19
Z97634-5|CAM26404.1| 194|Homo sapiens mitochondrial ribosomal p... 96 3e-19
Z97634-3|CAI95594.1| 256|Homo sapiens mitochondrial ribosomal p... 96 3e-19
Z97634-2|CAM26403.1| 240|Homo sapiens mitochondrial ribosomal p... 96 3e-19
BC000990-1|AAH00990.2| 256|Homo sapiens mitochondrial ribosomal... 96 3e-19
BC000507-1|AAH00507.2| 256|Homo sapiens mitochondrial ribosomal... 96 3e-19
Z97634-4|CAI95595.1| 256|Homo sapiens mitochondrial ribosomal p... 91 1e-17
AK096844-1|BAC04874.1| 158|Homo sapiens protein ( Homo sapiens ... 55 8e-07
>Z97634-6|CAI95596.1| 218|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 218
Score = 95.9 bits (228), Expect = 3e-19
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Frame = +3
Query: 204 GIASELPAAYKKFWREWKLLKPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 383
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 384 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 557
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 558 DHYGFDHYLLKTP 596
+ YG D Y+LKTP
Sbjct: 137 EAYGLDFYILKTP 149
>Z97634-5|CAM26404.1| 194|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 194
Score = 95.9 bits (228), Expect = 3e-19
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Frame = +3
Query: 204 GIASELPAAYKKFWREWKLLKPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 383
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 384 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 557
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 558 DHYGFDHYLLKTP 596
+ YG D Y+LKTP
Sbjct: 137 EAYGLDFYILKTP 149
>Z97634-3|CAI95594.1| 256|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 256
Score = 95.9 bits (228), Expect = 3e-19
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Frame = +3
Query: 204 GIASELPAAYKKFWREWKLLKPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 383
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 384 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 557
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 558 DHYGFDHYLLKTP 596
+ YG D Y+LKTP
Sbjct: 137 EAYGLDFYILKTP 149
>Z97634-2|CAM26403.1| 240|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 240
Score = 95.9 bits (228), Expect = 3e-19
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Frame = +3
Query: 204 GIASELPAAYKKFWREWKLLKPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 383
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 384 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 557
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 558 DHYGFDHYLLKTP 596
+ YG D Y+LKTP
Sbjct: 137 EAYGLDFYILKTP 149
>BC000990-1|AAH00990.2| 256|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 256
Score = 95.9 bits (228), Expect = 3e-19
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Frame = +3
Query: 204 GIASELPAAYKKFWREWKLLKPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 383
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGYYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 384 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 557
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 558 DHYGFDHYLLKTP 596
+ YG D Y+LKTP
Sbjct: 137 EAYGLDFYILKTP 149
>BC000507-1|AAH00507.2| 256|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 256
Score = 95.9 bits (228), Expect = 3e-19
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Frame = +3
Query: 204 GIASELPAAYKKFWREWKLLKPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 383
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 384 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 557
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 558 DHYGFDHYLLKTP 596
+ YG D Y+LKTP
Sbjct: 137 EAYGLDFYILKTP 149
>Z97634-4|CAI95595.1| 256|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 256
Score = 91.1 bits (216), Expect = 1e-17
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Frame = +3
Query: 204 GIASELPAAYKKFWREWKLLKPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 383
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 384 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 557
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 558 DHYGFDHYLLK 590
+ YG D Y+LK
Sbjct: 137 EAYGLDFYILK 147
>AK096844-1|BAC04874.1| 158|Homo sapiens protein ( Homo sapiens
cDNA FLJ39525 fis, clone PUAEN2002758. ).
Length = 158
Score = 54.8 bits (126), Expect = 8e-07
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +3
Query: 204 GIASELPAAYKKFWREWKLLKPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 383
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 384 EGIWGGEAVVKG 419
G+WGGE + G
Sbjct: 77 RGLWGGEGWILG 88
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,362,353
Number of Sequences: 237096
Number of extensions: 2550651
Number of successful extensions: 8479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8472
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22690981476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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