Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B09_e546_03.seq
         (1524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31460.1 68417.m04470 ribosomal protein L28 family protein ri...    42   0.001
At5g45490.1 68418.m05588 disease resistance protein-related cont...    29   6.1  

>At4g31460.1 68417.m04470 ribosomal protein L28 family protein
           ribosomal protein YmL14 precursor, mitochondrial -
           Saccharomyces cerevisiae,PIR2:S50921
          Length = 212

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +3

Query: 387 GIWGGEAVVKGFQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLINDHY 566
           G++ G  +  G +  +    +    W P ++   + S + ++H+ V VT   +R I+   
Sbjct: 46  GLYAGRHIQYGNRVSEDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAG 105

Query: 567 GFDHYLLKTP 596
           G D YLLKTP
Sbjct: 106 GIDEYLLKTP 115


>At5g45490.1 68418.m05588 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 354

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 309 RDELTGETLPIQNIPIPLKYPAEIHEGIWG-GEAVVKGFQKRDPR 440
           RDE   + L  Q   I   +P   H+ +W   +AVVK  QK  PR
Sbjct: 252 RDENLAKNLVAQKHEIHRLWPLSDHQSVWKIYDAVVKDKQKESPR 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,941,460
Number of Sequences: 28952
Number of extensions: 372922
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4077124416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)