Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B08_e538_04.seq
         (1538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32910.1 68414.m04054 transferase family protein low similari...    32   0.88 
At4g11720.1 68417.m01870 hypothetical protein                          31   2.7  

>At1g32910.1 68414.m04054 transferase family protein low similarity
           to anthranilate N-hydroxycinnamoyl/benzoyltransferase
           Dianthus caryophyllus GI:2239091, benzylalcohol
           acetyltransferase Clarkia breweri GI:6166336; contains
           Pfam profile PF02458 transferase family
          Length = 464

 Score = 32.3 bits (70), Expect = 0.88
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
 Frame = +1

Query: 70  FGTRLVAVLFEKPRXWCTNQ-HRV--QGVGEEHFL---------RPL-RTSRVCSLRADG 210
           FG + +  L +KP  W TN+ HR   + V +EHFL         RP+   SR+ S   D 
Sbjct: 315 FGGQSIDDLIDKPLSWVTNEVHRFLEEAVTKEHFLNLIDWVEIHRPIPAVSRIYSTGTDD 374

Query: 211 GPR--LSTNRTSPL 246
           GP   +S+ R+ P+
Sbjct: 375 GPAFVVSSGRSFPV 388


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 566 LSNQQRLIQPSRMDKLNRSQSFHSHKTQIVQHNSLHSHNTH 444
           L + +RL+ PSR D +NR    H H+     H   H  + H
Sbjct: 554 LDHHRRLL-PSRADVVNRHHHHHKHRHHHNHHRRTHQRHKH 593


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,688,309
Number of Sequences: 28952
Number of extensions: 379439
Number of successful extensions: 790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4125317376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)