Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B07_e530_03.seq
         (1516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53658| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.7  
SB_231| Best HMM Match : Granulin (HMM E-Value=5.4)                    29   9.7  

>SB_53658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 445 HDNNNNNKTLFHFDLKANTTSTRYITSR 362
           HDNNNNN    H D   N+ +  + +SR
Sbjct: 108 HDNNNNNNNNDHHDNNNNSLNHNHTSSR 135


>SB_231| Best HMM Match : Granulin (HMM E-Value=5.4)
          Length = 85

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 487 HCTSKAYCVHRLVLHDNNNNNKTLFHFDLKANTTSTR--YITSRIVKHNYK 341
           HC +   C   LV+ +   +   LFHF+ ++ + S R  +   ++VKH++K
Sbjct: 23  HCKAHQACQGVLVVSNQFIDTALLFHFNHRSASDSVRLTHEQVQVVKHDFK 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,428,991
Number of Sequences: 59808
Number of extensions: 498688
Number of successful extensions: 1832
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1829
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4918128563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)